{ "type": "genome", "identifier": "GCA_004193515.1", "organism": "Sphingobacteriaceae bacterium", "title": "Sphingobacteriaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004193515.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678679", "wgs_master": "SEFF00000000.1", "refseq_category": "na", "taxid": "2021370", "species_taxid": "2021370", "organism_name": "Sphingobacteriaceae bacterium", "infraspecific_name": "", "isolate": "PMG_009", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/06", "asm_name": "ASM419351v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/193/515/GCA_004193515.1_ASM419351v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-06", "dateModified": "2019-02-06", "datePublished": "2019-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacteriaceae bacterium" ], "sample_taxid": [ "2021370" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.735 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.06, "contamination": 51.73, "strain_heterogeneity": 91.18, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6128190", "Number of Sequences": "2045", "Longest Sequences (bp)": "42884", "N50 (bp)": "3870", "Gap Ratio (%)": "0.002236", "GCcontent (%)": "38.9", "Number of CDSs": "4337", "Average Protein Length": "262.2", "Coding Ratio (%)": "55.7", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter arboris", "strain": "strain=HMF7410", "accession": "GCA_009754915.1", "taxid": 2682090, "species_taxid": 2682090, "relation_to_type": "type", "validated": true, "ani": 79.0647, "matched_fragments": 391, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 76.3994, "matched_fragments": 52, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter galii", "strain": "strain=CCM 8711", "accession": "GCA_014635825.1", "taxid": 2005073, "species_taxid": 2005073, "relation_to_type": "type", "validated": true, "ani": 76.2999, "matched_fragments": 76, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 76.0241, "matched_fragments": 71, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 76.0085, "matched_fragments": 72, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 75.9759, "matched_fragments": 63, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter xinganensis", "strain": "strain=BJC16-A31", "accession": "GCA_002257585.1", "taxid": 1234841, "species_taxid": 1234841, "relation_to_type": "type", "validated": true, "ani": 75.9633, "matched_fragments": 54, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 75.9629, "matched_fragments": 57, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter boryungensis", "strain": "strain=KCTC 23157", "accession": "GCA_015221995.1", "taxid": 768480, "species_taxid": 768480, "relation_to_type": "type", "validated": true, "ani": 75.9207, "matched_fragments": 53, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 75.9123, "matched_fragments": 63, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 75.9117, "matched_fragments": 58, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 75.8853, "matched_fragments": 69, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter terrae", "strain": "strain=DSM 17933", "accession": "GCA_900100705.1", "taxid": 405671, "species_taxid": 405671, "relation_to_type": "type", "validated": true, "ani": 75.8784, "matched_fragments": 52, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=DSM 26907", "accession": "GCA_900116355.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 75.8727, "matched_fragments": 72, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gracilis", "strain": "strain=DSM 18602", "accession": "GCA_003633615.1", "taxid": 423350, "species_taxid": 423350, "relation_to_type": "type", "validated": true, "ani": 75.8691, "matched_fragments": 77, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 75.8687, "matched_fragments": 51, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 75.8549, "matched_fragments": 67, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyungheensis", "strain": "strain=KACC 16221", "accession": "GCA_000812965.1", "taxid": 1069985, "species_taxid": 1069985, "relation_to_type": "type", "validated": true, "ani": 75.8197, "matched_fragments": 55, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8015, "matched_fragments": 54, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Daejeonella oryzae", "strain": "strain=DSM 19973", "accession": "GCA_000422945.1", "taxid": 1122943, "species_taxid": 1122943, "relation_to_type": "type", "validated": true, "ani": 75.7947, "matched_fragments": 51, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 75.7906, "matched_fragments": 68, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter soli", "strain": "strain=DSM 18609", "accession": "GCA_900101435.1", "taxid": 390242, "species_taxid": 390242, "relation_to_type": "type", "validated": true, "ani": 75.748, "matched_fragments": 54, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 75.7412, "matched_fragments": 71, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter zeae", "strain": "strain=CGMCC 1.15287", "accession": "GCA_014641575.1", "taxid": 1737356, "species_taxid": 1737356, "relation_to_type": "type", "validated": true, "ani": 75.7251, "matched_fragments": 50, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter zeae", "strain": "strain=DSM 100774", "accession": "GCA_014196715.1", "taxid": 1737356, "species_taxid": 1737356, "relation_to_type": "type", "validated": true, "ani": 75.7251, "matched_fragments": 50, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter endophyticus", "strain": "strain=RS1", "accession": "GCA_003351025.1", "taxid": 2675003, "species_taxid": 2675003, "relation_to_type": "type", "validated": true, "ani": 75.7141, "matched_fragments": 56, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobium manganitolerans", "strain": "strain=YS-25", "accession": "GCA_003609575.1", "taxid": 1842495, "species_taxid": 1842495, "relation_to_type": "type", "validated": true, "ani": 75.5348, "matched_fragments": 59, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 75.4395, "matched_fragments": 60, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ginsenosidimutans", "strain": "strain=KACC 14530", "accession": "GCA_001442625.1", "taxid": 687842, "species_taxid": 687842, "relation_to_type": "type", "validated": true, "ani": 75.4355, "matched_fragments": 52, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter miscanthi", "strain": "strain=RS10", "accession": "GCA_003315595.1", "taxid": 2259170, "species_taxid": 2259170, "relation_to_type": "type", "validated": true, "ani": 75.4322, "matched_fragments": 65, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 75.3491, "matched_fragments": 62, "total_fragments": 976, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.06, "contamination": 51.73, "strain_heterogeneity": 91.18 }, "gtdb_result": [ { "accession": "GCA_903642215.1", "gtdb_species": "s__Mucilaginibacter_A sp903642215", "ani": 80.7172, "matched_fragments": 404, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009754915.1", "gtdb_species": "s__Mucilaginibacter_A arboris", "ani": 79.0821, "matched_fragments": 389, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149275.1", "gtdb_species": "s__Mucilaginibacter sp013149275", "ani": 76.4515, "matched_fragments": 60, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903893715.1", "gtdb_species": "s__Mucilaginibacter sp903893715", "ani": 76.3418, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765905.1", "gtdb_species": "s__Mucilaginibacter sp009765905", "ani": 75.9703, "matched_fragments": 57, "total_fragments": 976, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002257585.1", "gtdb_species": "s__Mucilaginibacter xinganensis", "ani": 75.9633, "matched_fragments": 54, "total_fragments": 976, "gtdb_taxonomy": 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