{ "type": "genome", "identifier": "GCA_004210465.1", "organism": "Microbacterium sp.", "title": "Microbacterium sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004210465.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678604", "wgs_master": "SECJ00000000.1", "refseq_category": "na", "taxid": "51671", "species_taxid": "51671", "organism_name": "Microbacterium sp.", "infraspecific_name": "", "isolate": "PMG_132", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421046v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/210/465/GCA_004210465.1_ASM421046v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium sp." ], "sample_taxid": [ "51671" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.28, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3406443", "Number of Sequences": "1648", "Longest Sequences (bp)": "11968", "N50 (bp)": "2221", "Gap Ratio (%)": "0.002084", "GCcontent (%)": "70.0", "Number of CDSs": "1971", "Average Protein Length": "255.8", "Coding Ratio (%)": "44.4", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": "GCA_003651225.1", "taxid": 1714841, "species_taxid": 1714841, "relation_to_type": "type", "validated": true, "ani": 81.8007, "matched_fragments": 176, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=K-1", "accession": "GCA_008017435.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 81.3482, "matched_fragments": 183, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=NBRC 108778", "accession": "GCA_007992455.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 81.3265, "matched_fragments": 183, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium aurum", "strain": "strain=DSM 8600", "accession": "GCA_016907815.1", "taxid": 36805, "species_taxid": 36805, "relation_to_type": "type", "validated": true, "ani": 81.3204, "matched_fragments": 171, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=DSM 20427", "accession": "GCA_006716815.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.2293, "matched_fragments": 172, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=NBRC 14135", "accession": "GCA_006539445.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.205, "matched_fragments": 174, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lacticum", "strain": "strain=JCM 1379", "accession": "GCA_014646835.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.0992, "matched_fragments": 176, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hominis", "strain": "strain=NBRC 15708", "accession": "GCA_001592125.1", "taxid": 162426, "species_taxid": 162426, "relation_to_type": "type", "validated": true, "ani": 80.9455, "matched_fragments": 172, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 80.8528, "matched_fragments": 170, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium laevaniformans", "strain": "strain=DSM 20140", "accession": "GCA_016907555.1", "taxid": 36807, "species_taxid": 36807, "relation_to_type": "type", "validated": true, "ani": 80.7954, "matched_fragments": 151, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hominis", "strain": "strain=LCDC 84-0209", "accession": "GCA_001553805.1", "taxid": 162426, "species_taxid": 162426, "relation_to_type": "type", "validated": true, "ani": 80.7842, "matched_fragments": 178, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium dextranolyticum", "strain": "strain=DSM 8607", "accession": "GCA_016907295.1", "taxid": 36806, "species_taxid": 36806, "relation_to_type": "type", "validated": true, "ani": 80.7005, "matched_fragments": 157, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium pullorum", "strain": "strain=Sa4CUA7", "accession": "GCA_014836535.1", "taxid": 2762236, "species_taxid": 2762236, "relation_to_type": "type", "validated": true, "ani": 80.6142, "matched_fragments": 164, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sulfonylureivorans", "strain": "strain=LAM7116", "accession": "GCA_003999995.1", "taxid": 2486854, "species_taxid": 2486854, "relation_to_type": "type", "validated": true, "ani": 80.6084, "matched_fragments": 169, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ureisolvens", "strain": "strain=CFH S00084", "accession": "GCA_015278315.1", "taxid": 2781186, "species_taxid": 2781186, "relation_to_type": "type", "validated": true, "ani": 80.531, "matched_fragments": 179, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 80.5097, "matched_fragments": 180, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 80.3703, "matched_fragments": 163, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 80.314, "matched_fragments": 172, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lushaniae", "strain": "strain=L-031", "accession": "GCA_008727775.1", "taxid": 2614639, "species_taxid": 2614639, "relation_to_type": "type", "validated": true, "ani": 80.016, "matched_fragments": 151, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium commune", "strain": "strain=Re1", "accession": "GCA_014836945.1", "taxid": 2762219, "species_taxid": 2762219, "relation_to_type": "type", "validated": true, "ani": 79.9447, "matched_fragments": 134, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium luteum", "strain": "strain=A18JL200", "accession": "GCA_015277875.1", "taxid": 2782167, "species_taxid": 2782167, "relation_to_type": "type", "validated": true, "ani": 79.4683, "matched_fragments": 137, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium 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"accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 76.3242, "matched_fragments": 72, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, "species_taxid": 29299, "relation_to_type": "type", "validated": true, "ani": 76.0278, "matched_fragments": 62, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 75.8034, "matched_fragments": 72, "total_fragments": 297, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.28, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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