{ "type": "genome", "identifier": "GCA_004210595.1", "organism": "Rubrivivax sp.", "title": "Rubrivivax sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004210595.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678675", "wgs_master": "SEFB00000000.1", "refseq_category": "na", "taxid": "50259", "species_taxid": "50259", "organism_name": "Rubrivivax sp.", "infraspecific_name": "", "isolate": "PMG_229", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421059v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/210/595/GCA_004210595.1_ASM421059v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubrivivax sp." ], "sample_taxid": [ "50259" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 60.25, "strain_heterogeneity": 34.78, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6429864", "Number of Sequences": "935", "Longest Sequences (bp)": "125915", "N50 (bp)": "19111", "Gap Ratio (%)": "0.000964", "GCcontent (%)": "63.6", "Number of CDSs": "5145", "Average Protein Length": "318.2", "Coding Ratio (%)": "76.4", "Number of rRNAs": "1", "Number of tRNAs": "92", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquabacterium soli", "strain": "strain=SJQ9", "accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 82.096, "matched_fragments": 710, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium commune", "strain": "strain=DSM 11901", "accession": "GCA_004362855.1", "taxid": 70586, "species_taxid": 70586, "relation_to_type": "type", "validated": true, "ani": 81.712, "matched_fragments": 625, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium parvum", "strain": "strain=B6", "accession": "GCA_001447195.1", "taxid": 70584, "species_taxid": 70584, "relation_to_type": "type", "validated": true, "ani": 81.6551, "matched_fragments": 616, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, "relation_to_type": "type", "validated": true, "ani": 81.0248, "matched_fragments": 556, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium olei", "strain": "strain=NBRC 110486", "accession": "GCA_003100395.1", "taxid": 1296669, "species_taxid": 1296669, "relation_to_type": "type", "validated": true, "ani": 80.8438, "matched_fragments": 605, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium fontiphilum", "strain": "strain=CS-6", "accession": "GCA_009909205.1", "taxid": 450365, "species_taxid": 450365, "relation_to_type": "type", "validated": true, "ani": 80.3031, "matched_fragments": 542, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 79.0916, "matched_fragments": 426, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 78.9792, "matched_fragments": 406, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 78.905, "matched_fragments": 428, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 78.8773, "matched_fragments": 373, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 78.8679, "matched_fragments": 423, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 78.8507, "matched_fragments": 427, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 78.8019, "matched_fragments": 421, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 78.78, "matched_fragments": 400, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 78.7455, "matched_fragments": 405, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=HS", "accession": "GCA_013426955.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 78.6498, "matched_fragments": 399, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.5503, "matched_fragments": 391, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 78.4445, "matched_fragments": 448, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucibacter toxinivorans", "strain": "strain=DSM 16998", "accession": "GCA_004362525.1", "taxid": 270368, "species_taxid": 270368, "relation_to_type": "type", "validated": true, "ani": 78.4038, "matched_fragments": 424, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella paludis", "strain": "strain=KCTC 32238", "accession": "GCA_018069865.1", "taxid": 1233411, "species_taxid": 1233411, "relation_to_type": "type", "validated": true, "ani": 78.2371, "matched_fragments": 298, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 78.2083, "matched_fragments": 397, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas sediminis", "strain": "strain=YIM 72259", "accession": "GCA_007556605.1", "taxid": 2588941, "species_taxid": 2588941, "relation_to_type": 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91, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas carbonis", "strain": "strain=KCTC 42013", "accession": "GCA_014396975.1", "taxid": 1463158, "species_taxid": 1463158, "relation_to_type": "type", "validated": true, "ani": 76.6365, "matched_fragments": 91, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=LMG 19653", "accession": "GCA_006352395.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 76.314, "matched_fragments": 127, "total_fragments": 1677, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 60.25, "strain_heterogeneity": 34.78 }, "gtdb_result": [ { "accession": "GCA_013822685.1", "gtdb_species": "s__Aquabacterium sp013822685", "ani": 83.7369, "matched_fragments": 890, "total_fragments": 1677, "gtdb_taxonomy": 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