{ "type": "genome", "identifier": "GCA_004210695.1", "organism": "Acinetobacter sp.", "title": "Acinetobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004210695.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678488", "wgs_master": "SDYA00000000.1", "refseq_category": "na", "taxid": "472", "species_taxid": "472", "organism_name": "Acinetobacter sp.", "infraspecific_name": "", "isolate": "PMG_112", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421069v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/210/695/GCA_004210695.1_ASM421069v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter sp." ], "sample_taxid": [ "472" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.169 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.65, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4082668", "Number of Sequences": "410", "Longest Sequences (bp)": "351743", "N50 (bp)": "70318", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.6", "Number of CDSs": "3370", "Average Protein Length": "306.1", "Coding Ratio (%)": "75.8", "Number of rRNAs": "2", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 84.8302, "matched_fragments": 763, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrestris", "strain": "strain=ANC 4471", "accession": "GCA_004331155.1", "taxid": 2529843, "species_taxid": 2529843, "relation_to_type": "suspected-type", "validated": true, "ani": 84.6219, "matched_fragments": 778, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 82.7743, "matched_fragments": 688, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 81.1894, "matched_fragments": 511, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter albensis", "strain": "strain=ANC 4874", "accession": "GCA_900095025.1", "taxid": 1673609, "species_taxid": 1673609, "relation_to_type": "type", "validated": true, "ani": 81.1782, "matched_fragments": 557, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 81.0101, "matched_fragments": 533, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.9518, "matched_fragments": 522, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.8687, "matched_fragments": 514, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.7971, "matched_fragments": 524, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.7857, "matched_fragments": 545, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7465, "matched_fragments": 514, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=CIP 64.6", "accession": "GCA_000368045.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7043, "matched_fragments": 503, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6809, "matched_fragments": 516, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6466, "matched_fragments": 502, "total_fragments": 1146, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.3801, 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