{ "type": "genome", "identifier": "GCA_004210735.1", "organism": "Brevundimonas sp.", "title": "Brevundimonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004210735.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678528", "wgs_master": "SDZL00000000.1", "refseq_category": "na", "taxid": "1871086", "species_taxid": "1871086", "organism_name": "Brevundimonas sp.", "infraspecific_name": "", "isolate": "PMG_242", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421073v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/210/735/GCA_004210735.1_ASM421073v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas sp." ], "sample_taxid": [ "1871086" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "0.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.38, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2826095", "Number of Sequences": "165", "Longest Sequences (bp)": "93380", "N50 (bp)": "43005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "2719", "Average Protein Length": "300.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas bullata", "strain": "strain=HAMBI_262", "accession": "GCA_003350205.1", "taxid": 13160, "species_taxid": 13160, "relation_to_type": "type", "validated": true, "ani": 83.7276, "matched_fragments": 612, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pondensis", "strain": "strain=LVF1", "accession": "GCA_017487345.1", "taxid": 2774189, "species_taxid": 2774189, "relation_to_type": "type", "validated": true, "ani": 83.5193, "matched_fragments": 637, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas diminuta", "strain": "strain=NCTC8545", "accession": "GCA_900445995.1", "taxid": 293, "species_taxid": 293, "relation_to_type": "type", "validated": true, "ani": 83.3378, "matched_fragments": 615, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas diminuta", "strain": "strain=ATCC 11568", "accession": "GCA_000204035.1", "taxid": 293, "species_taxid": 293, "relation_to_type": "type", "validated": true, "ani": 83.3118, "matched_fragments": 588, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas naejangsanensis", "strain": "strain=DSM 23858", "accession": "GCA_000421705.1", "taxid": 588932, "species_taxid": 588932, "relation_to_type": "type", "validated": true, "ani": 83.142, "matched_fragments": 596, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 83.136, "matched_fragments": 578, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 82.8583, "matched_fragments": 594, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 82.3376, "matched_fragments": 588, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", "validated": true, "ani": 82.1419, "matched_fragments": 598, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 82.0512, "matched_fragments": 597, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 82.0437, "matched_fragments": 580, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 81.9385, "matched_fragments": 596, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas goettingensis", "strain": "strain=LVF2", "accession": "GCA_017487405.1", "taxid": 2774190, "species_taxid": 2774190, "relation_to_type": "type", "validated": true, "ani": 81.5958, "matched_fragments": 606, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas viscosa", "strain": "strain=CGMCC 1.10683", "accession": "GCA_900116065.1", "taxid": 871741, "species_taxid": 871741, "relation_to_type": "type", "validated": true, "ani": 81.4417, "matched_fragments": 568, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas fluminis", "strain": "strain=LA-55", "accession": "GCA_003934285.1", "taxid": 2487274, "species_taxid": 2487274, "relation_to_type": "type", "validated": true, "ani": 81.1218, "matched_fragments": 528, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lutea", "strain": "strain=NS26", "accession": "GCA_003704105.1", "taxid": 2293980, "species_taxid": 2293980, "relation_to_type": "type", "validated": true, "ani": 80.386, "matched_fragments": 490, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 80.3512, "matched_fragments": 535, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pishanensis", "strain": "strain=CHPC 1.3453", "accession": "GCA_022750635.1", "taxid": 2896315, "species_taxid": 2896315, "relation_to_type": "type", "validated": true, "ani": 79.1326, "matched_fragments": 394, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas aveniformis", "strain": "strain=DSM 17977", "accession": "GCA_000428765.1", "taxid": 370977, "species_taxid": 370977, "relation_to_type": "type", "validated": true, "ani": 78.9385, "matched_fragments": 300, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 77.944, "matched_fragments": 357, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.38, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004210735.1", "gtdb_species": "s__Brevundimonas sp004210735", "ani": 100.0, "matched_fragments": 862, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017308115.1", "gtdb_species": "s__Brevundimonas sp017308115", "ani": 83.5286, "matched_fragments": 551, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014207965.1", "gtdb_species": "s__Brevundimonas bullata_A", "ani": 83.52, "matched_fragments": 620, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "97.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000204035.1", "gtdb_species": "s__Brevundimonas diminuta", "ani": 83.2772, "matched_fragments": 591, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "95.74", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_014836405.1", "gtdb_species": "s__Brevundimonas sp014836405", "ani": 83.1416, "matched_fragments": 576, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196125.1", "gtdb_species": "s__Brevundimonas mediterranea", "ani": 82.3695, "matched_fragments": 585, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0657, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003248455.1", "gtdb_species": "s__Brevundimonas sp003248455", "ani": 82.2543, "matched_fragments": 565, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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