{ "type": "genome", "identifier": "GCA_004210835.1", "organism": "Hymenobacter sp.", "title": "Hymenobacter sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004210835.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678593", "wgs_master": "SEBY00000000.1", "refseq_category": "na", "taxid": "1898978", "species_taxid": "1898978", "organism_name": "Hymenobacter sp.", "infraspecific_name": "", "isolate": "PMG_015", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421083v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/210/835/GCA_004210835.1_ASM421083v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter sp." ], "sample_taxid": [ "1898978" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.571 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 31.77, "contamination": 22.92, "strain_heterogeneity": 85.71, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5514968", "Number of Sequences": "1566", "Longest Sequences (bp)": "26249", "N50 (bp)": "4996", "Gap Ratio (%)": "0.001432", "GCcontent (%)": "59.6", "Number of CDSs": "4108", "Average Protein Length": "260.2", "Coding Ratio (%)": "58.2", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter setariae", "strain": "strain=Fur1", "accession": "GCA_007713685.1", "taxid": 2594794, "species_taxid": 2594794, "relation_to_type": "type", "validated": true, "ani": 82.0629, "matched_fragments": 592, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter baengnokdamensis", "strain": "strain=BRD72", "accession": "GCA_008728635.1", "taxid": 2615203, "species_taxid": 2615203, "relation_to_type": "type", "validated": true, "ani": 81.1324, "matched_fragments": 488, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter polaris", "strain": "strain=RP-2-7", "accession": "GCA_012927305.1", "taxid": 2682546, "species_taxid": 2682546, "relation_to_type": "type", "validated": true, "ani": 81.1222, "matched_fragments": 588, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ginkgonis", "strain": "strain=HMF4947", "accession": "GCA_009755225.1", "taxid": 2682976, "species_taxid": 2682976, "relation_to_type": "type", "validated": true, "ani": 81.0234, "matched_fragments": 555, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter coccineus", "strain": "strain=CCM 8649", "accession": "GCA_001816125.1", "taxid": 1908235, "species_taxid": 1908235, "relation_to_type": "type", "validated": true, "ani": 79.8932, "matched_fragments": 485, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter caeli", "strain": "strain=9A", "accession": "GCA_013294115.1", "taxid": 2735894, "species_taxid": 2735894, 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79.338, "matched_fragments": 469, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 78.646, "matched_fragments": 382, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 78.247, "matched_fragments": 354, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 78.1401, "matched_fragments": 375, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter actinosclerus", "strain": "strain=DSM 15310", "accession": "GCA_900111515.1", "taxid": 82805, "species_taxid": 82805, "relation_to_type": "type", "validated": true, "ani": 78.1275, "matched_fragments": 342, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrophilus", "strain": "strain=CGMCC 1.8975", "accession": "GCA_900107135.1", "taxid": 651662, "species_taxid": 651662, "relation_to_type": "type", "validated": true, "ani": 77.7645, "matched_fragments": 315, "total_fragments": 1021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 77.688, "matched_fragments": 313, "total_fragments": 1021, "ani_threshold": 95, "status": 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