{ "type": "genome", "identifier": "GCA_004211175.1", "organism": "Brevundimonas sp.", "title": "Brevundimonas sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004211175.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678524", "wgs_master": "SDZH00000000.1", "refseq_category": "na", "taxid": "1871086", "species_taxid": "1871086", "organism_name": "Brevundimonas sp.", "infraspecific_name": "", "isolate": "PMG_167", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421117v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/211/175/GCA_004211175.1_ASM421117v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas sp." ], "sample_taxid": [ "1871086" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.071 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.83, "contamination": 63.37, "strain_heterogeneity": 53.12, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3839680", "Number of Sequences": "1223", "Longest Sequences (bp)": "52443", "N50 (bp)": "4221", "Gap Ratio (%)": "0.000313", "GCcontent (%)": "66.8", "Number of CDSs": "2939", "Average Protein Length": "255.1", "Coding Ratio (%)": "58.6", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas lenta", "strain": "strain=DSM 23960", "accession": "GCA_014196335.1", "taxid": 424796, "species_taxid": 424796, "relation_to_type": "type", "validated": true, "ani": 83.6398, "matched_fragments": 385, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas alba", "strain": "strain=DSM 4736", "accession": "GCA_011927945.1", "taxid": 74314, "species_taxid": 74314, "relation_to_type": "type", "validated": true, "ani": 82.2525, "matched_fragments": 376, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas viscosa", "strain": "strain=CGMCC 1.10683", "accession": "GCA_900116065.1", "taxid": 871741, "species_taxid": 871741, "relation_to_type": "type", "validated": true, "ani": 81.889, "matched_fragments": 345, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas basaltis", "strain": "strain=DSM 25335", "accession": "GCA_014202075.1", "taxid": 472166, "species_taxid": 472166, "relation_to_type": "type", "validated": true, "ani": 81.6604, "matched_fragments": 328, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 81.4437, "matched_fragments": 336, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas goettingensis", "strain": "strain=LVF2", "accession": "GCA_017487405.1", "taxid": 2774190, "species_taxid": 2774190, "relation_to_type": "type", "validated": true, "ani": 81.3776, "matched_fragments": 361, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 81.3447, "matched_fragments": 323, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas diminuta", "strain": "strain=ATCC 11568", "accession": "GCA_000204035.1", "taxid": 293, "species_taxid": 293, "relation_to_type": "type", "validated": true, "ani": 81.2649, "matched_fragments": 305, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas subvibrioides", "strain": "strain=ATCC 15264", "accession": "GCA_000144605.1", "taxid": 74313, "species_taxid": 74313, "relation_to_type": "type", "validated": true, "ani": 81.1483, "matched_fragments": 326, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 81.0255, "matched_fragments": 309, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vesicularis", "strain": "strain=NBRC 12165", "accession": "GCA_001592205.1", "taxid": 41276, "species_taxid": 41276, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0137, "matched_fragments": 305, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas fluminis", "strain": "strain=LA-55", "accession": "GCA_003934285.1", "taxid": 2487274, "species_taxid": 2487274, "relation_to_type": "type", "validated": true, "ani": 80.9721, "matched_fragments": 303, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", "validated": true, "ani": 80.9005, "matched_fragments": 310, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas naejangsanensis", "strain": "strain=DSM 23858", "accession": "GCA_000421705.1", "taxid": 588932, "species_taxid": 588932, "relation_to_type": "type", "validated": true, "ani": 80.8434, "matched_fragments": 293, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 80.7556, "matched_fragments": 285, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 80.642, "matched_fragments": 315, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bacteroides", "strain": "strain=DSM 4726", "accession": "GCA_000701445.1", "taxid": 74311, "species_taxid": 74311, "relation_to_type": "type", "validated": true, "ani": 80.3947, "matched_fragments": 300, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 79.9559, "matched_fragments": 273, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pishanensis", "strain": "strain=CHPC 1.3453", "accession": "GCA_022750635.1", "taxid": 2896315, "species_taxid": 2896315, "relation_to_type": "type", "validated": true, "ani": 78.1049, "matched_fragments": 189, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 77.342, "matched_fragments": 184, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 75.8844, "matched_fragments": 50, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax soli", "strain": "strain=NBRC 106424", "accession": "GCA_001591385.1", "taxid": 376815, "species_taxid": 376815, "relation_to_type": "type", "validated": true, "ani": 75.6639, "matched_fragments": 57, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucibacter toxinivorans", "strain": "strain=DSM 16998", "accession": "GCA_004362525.1", "taxid": 270368, "species_taxid": 270368, "relation_to_type": "type", "validated": true, "ani": 75.5859, "matched_fragments": 59, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 75.5317, "matched_fragments": 58, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 75.3918, "matched_fragments": 53, "total_fragments": 653, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.83, "contamination": 63.37, "strain_heterogeneity": 53.12 }, "gtdb_result": [ { "accession": "GCF_006547065.1", "gtdb_species": "s__Brevundimonas sp006547065", "ani": 86.0575, "matched_fragments": 413, "total_fragments": 653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196335.1", "gtdb_species": "s__Brevundimonas lenta", "ani": 83.6398, "matched_fragments": 385, "total_fragments": 653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016742215.1", "gtdb_species": "s__Brevundimonas sp016742215", "ani": 83.3178, "matched_fragments": 235, "total_fragments": 653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424025.1", "gtdb_species": "s__Brevundimonas sp001424025", "ani": 83.2975, "matched_fragments": 329, "total_fragments": 653, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011927945.1", "gtdb_species": "s__Brevundimonas alba", "ani": 82.2525, "matched_fragments": 376, "total_fragments": 653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016183935.1", "gtdb_species": "s__Brevundimonas sp016183935", "ani": 82.2403, "matched_fragments": 335, "total_fragments": 653, "gtdb_taxonomy": 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