{ "type": "genome", "identifier": "GCA_004211385.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004211385.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678584", "wgs_master": "SEBP00000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "PMG_202", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/19", "asm_name": "ASM421138v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/211/385/GCA_004211385.1_ASM421138v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-19", "dateModified": "2019-02-19", "datePublished": "2019-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.689 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 33.85, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5929650", "Number of Sequences": "1662", "Longest Sequences (bp)": "21396", "N50 (bp)": "4759", "Gap Ratio (%)": "0.001197", "GCcontent (%)": "35.6", "Number of CDSs": "4070", "Average Protein Length": "302.0", "Coding Ratio (%)": "62.2", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter cryotolerans", "strain": "strain=AR-2-6", "accession": "GCA_005116475.1", "taxid": 2571270, "species_taxid": 2571270, "relation_to_type": "type", "validated": true, "ani": 89.8571, "matched_fragments": 573, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter agri", "strain": "strain=PB92", "accession": "GCA_000258495.1", "taxid": 454586, "species_taxid": 454586, "relation_to_type": "type", "validated": true, "ani": 85.3757, "matched_fragments": 241, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter namyangjuensis", "strain": "strain=5G38", "accession": "GCA_003313325.1", "taxid": 600626, "species_taxid": 600626, "relation_to_type": "type", "validated": true, "ani": 79.5699, "matched_fragments": 435, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigiditerrae", "strain": "strain=RP-1-13", "accession": "GCA_004331645.1", "taxid": 2530452, "species_taxid": 2530452, "relation_to_type": "type", "validated": true, "ani": 79.161, "matched_fragments": 395, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter polaris", "strain": "strain=RP-3-22", "accession": "GCA_005116505.1", "taxid": 2571273, "species_taxid": 2571273, "relation_to_type": "type", "validated": true, "ani": 79.1556, "matched_fragments": 425, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter planticolens", "strain": "strain=LMG 31464", "accession": "GCA_014172375.1", "taxid": 2679964, "species_taxid": 2679964, "relation_to_type": "type", "validated": true, "ani": 79.0875, "matched_fragments": 375, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter helvus", "strain": "strain=P-25", "accession": "GCA_005925325.1", "taxid": 2563444, "species_taxid": 2563444, "relation_to_type": "type", "validated": true, "ani": 77.5348, "matched_fragments": 254, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chinensis", "strain": "strain=JDX94", "accession": "GCA_003339865.1", "taxid": 2282421, "species_taxid": 2282421, "relation_to_type": "type", "validated": true, "ani": 77.4298, "matched_fragments": 222, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter alluvionis", "strain": "strain=DSM 19624", "accession": "GCA_003664035.1", "taxid": 475253, "species_taxid": 475253, "relation_to_type": "type", "validated": true, "ani": 77.3382, "matched_fragments": 198, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter insulae", "strain": "strain=DSM 18684", "accession": "GCA_900113525.1", "taxid": 414048, "species_taxid": 414048, "relation_to_type": "type", "validated": true, "ani": 77.3376, "matched_fragments": 193, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter xixiisoli", "strain": "strain=S27", "accession": "GCA_005925365.1", "taxid": 1476464, "species_taxid": 1476464, "relation_to_type": "type", "validated": true, "ani": 77.2879, "matched_fragments": 245, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter xixiisoli", "strain": "strain=CGMCC 1.12803", "accession": "GCA_900215335.1", "taxid": 1476464, "species_taxid": 1476464, "relation_to_type": "type", "validated": true, "ani": 77.2861, "matched_fragments": 247, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nototheniae", "strain": "strain=36B243", "accession": "GCA_004335085.1", "taxid": 2488994, "species_taxid": 2488994, "relation_to_type": "type", "validated": true, "ani": 77.1243, "matched_fragments": 196, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chitinilyticus", "strain": "strain=CM134L-2", "accession": "GCA_004025525.1", "taxid": 2233776, "species_taxid": 2233776, "relation_to_type": "type", "validated": true, "ani": 77.0428, "matched_fragments": 213, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 77.0094, "matched_fragments": 263, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter mucosus", "strain": "strain=Q8-18", "accession": "GCA_022200785.1", "taxid": 2895286, "species_taxid": 2895286, "relation_to_type": "type", "validated": true, "ani": 76.9298, "matched_fragments": 196, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyungheensis", "strain": "strain=KACC 16221", "accession": "GCA_000812965.1", "taxid": 1069985, "species_taxid": 1069985, "relation_to_type": "type", "validated": true, "ani": 76.8824, "matched_fragments": 199, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter changchengzhani", "strain": "strain=E01020", "accession": "GCA_004354365.1", "taxid": 2529274, "species_taxid": 2529274, "relation_to_type": "type", "validated": true, "ani": 76.8281, "matched_fragments": 176, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter rhizosphaerae", "strain": "strain=DSM 18610", "accession": "GCA_900111155.1", "taxid": 390241, "species_taxid": 390241, "relation_to_type": "type", "validated": true, "ani": 76.7527, "matched_fragments": 150, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nanyangensis", "strain": "strain=Q-4", "accession": "GCA_003313505.1", "taxid": 1562389, "species_taxid": 1562389, "relation_to_type": "type", "validated": true, "ani": 76.5526, "matched_fragments": 141, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter endophyticus", "strain": "strain=JBR3-12", "accession": "GCA_015679185.1", "taxid": 2789740, "species_taxid": 2789740, "relation_to_type": "type", "validated": true, "ani": 76.3265, "matched_fragments": 152, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 33.85, "strain_heterogeneity": 25.0 }, 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