{
    "type": "genome",
    "identifier": "GCA_004213165.1",
    "organism": "Prochlorococcus sp. MED-G132",
    "title": "Prochlorococcus sp. MED-G132",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad Miguel Hernandez",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004213165.1",
        "bioproject": "PRJNA352798",
        "biosample": "SAMN10841277",
        "wgs_master": "SHAR00000000.1",
        "refseq_category": "na",
        "taxid": "2518985",
        "species_taxid": "2518985",
        "organism_name": "Prochlorococcus sp. MED-G132",
        "infraspecific_name": "",
        "isolate": "MED-G132",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/19",
        "asm_name": "ASM421316v1",
        "submitter": "Universidad Miguel Hernandez",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/213/165/GCA_004213165.1_ASM421316v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-19",
    "dateModified": "2019-02-19",
    "datePublished": "2019-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prochlorococcus sp. MED-G132"
        ],
        "sample_taxid": [
            "2518985"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: off the coast of Alicante"
        ],
        "sample_host_location_id": [],
        "data_size": "0.433 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1508906",
        "Number of Sequences": "92",
        "Longest Sequences (bp)": "67208",
        "N50 (bp)": "23291",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "1408",
        "Average Protein Length": "299.0",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parasynechococcus marenigrum",
                "strain": "strain=WH 8102",
                "accession": "GCA_000195975.1",
                "taxid": 2881428,
                "species_taxid": 2881428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8069,
                "matched_fragments": 85,
                "total_fragments": 453,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000011485.1",
                "gtdb_species": "s__Prochlorococcus_C marinus_B",
                "ani": 96.7853,
                "matched_fragments": 448,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 19,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_003214855.1",
                "gtdb_species": "s__Prochlorococcus_C sp003214855",
                "ani": 96.048,
                "matched_fragments": 316,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000760295.1",
                "gtdb_species": "s__Prochlorococcus_C sp000760295",
                "ani": 95.7833,
                "matched_fragments": 438,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_014279875.1",
                "gtdb_species": "s__Synechococcus_C sp002172935",
                "ani": 76.9751,
                "matched_fragments": 73,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900474295.1",
                "gtdb_species": "s__Synechococcus_C sp900474295",
                "ani": 76.9195,
                "matched_fragments": 76,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014217855.1",
                "gtdb_species": "s__Synechococcus_C sp004332415",
                "ani": 76.8985,
                "matched_fragments": 92,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "96.99",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000195975.1",
                "gtdb_species": "s__Synechococcus_E sp000195975",
                "ani": 76.8069,
                "matched_fragments": 85,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_014304815.1",
                "gtdb_species": "s__Synechococcus_C sp001632165",
                "ani": 76.6982,
                "matched_fragments": 68,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "96.03",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002691345.1",
                "gtdb_species": "s__Synechococcus_E sp002691345",
                "ani": 76.6082,
                "matched_fragments": 50,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014279775.1",
                "gtdb_species": "s__Synechococcus_C sp002500205",
                "ani": 76.4755,
                "matched_fragments": 65,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_002690325.1",
                "gtdb_species": "s__Synechococcus_E sp002690325",
                "ani": 76.1437,
                "matched_fragments": 55,
                "total_fragments": 453,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Prochlorococcus_C",
        "s__Prochlorococcus_C marinus_B"
    ],
    "_genome_taxon": [
        "Prochlorococcus",
        "sp.",
        "MED-G132",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Prochlorococcus_C",
        "s__Prochlorococcus_C marinus_B",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Prochlorococcus",
        "C",
        "Prochlorococcus",
        "C",
        "marinus",
        "B"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}