{
    "type": "genome",
    "identifier": "GCA_004213605.1",
    "organism": "Flavobacteriales bacterium",
    "title": "Flavobacteriales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad Miguel Hernandez",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004213605.1",
        "bioproject": "PRJNA352798",
        "biosample": "SAMN10841236",
        "wgs_master": "SGZC00000000.1",
        "refseq_category": "na",
        "taxid": "2021391",
        "species_taxid": "2021391",
        "organism_name": "Flavobacteriales bacterium",
        "infraspecific_name": "",
        "isolate": "MED-G119",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/19",
        "asm_name": "ASM421360v1",
        "submitter": "Universidad Miguel Hernandez",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/213/605/GCA_004213605.1_ASM421360v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-19",
    "dateModified": "2019-02-19",
    "datePublished": "2019-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavobacteriales bacterium"
        ],
        "sample_taxid": [
            "2021391"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: off the coast of Alicante"
        ],
        "sample_host_location_id": [],
        "data_size": "0.407 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.15,
        "contamination": 2.08,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1446221",
        "Number of Sequences": "111",
        "Longest Sequences (bp)": "39862",
        "N50 (bp)": "15127",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.9",
        "Number of CDSs": "1203",
        "Average Protein Length": "331.8",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Patiriisocius marinus",
                "strain": "strain=NBRC 109484",
                "accession": "GCA_008974325.1",
                "taxid": 1397112,
                "species_taxid": 1397112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4942,
                "matched_fragments": 54,
                "total_fragments": 427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita sinensis",
                "strain": "strain=S1-10",
                "accession": "GCA_006346335.1",
                "taxid": 1382458,
                "species_taxid": 1382458,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3668,
                "matched_fragments": 51,
                "total_fragments": 427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter alginicilyticus",
                "strain": "strain=HZ22",
                "accession": "GCA_001310225.1",
                "taxid": 1736674,
                "species_taxid": 1736674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2481,
                "matched_fragments": 50,
                "total_fragments": 427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lutibacter flavus",
                "strain": "strain=DSM 27993",
                "accession": "GCA_900188355.1",
                "taxid": 691689,
                "species_taxid": 691689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6246,
                "matched_fragments": 52,
                "total_fragments": 427,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.15,
            "contamination": 2.08,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004213605.1",
                "gtdb_species": "s__GCA-002733185 sp004213605",
                "ani": 100.0,
                "matched_fragments": 422,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.79",
                "min_intra_species_ani": "95.79",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905181835.1",
                "gtdb_species": "s__GCA-002733185 sp905181835",
                "ani": 85.6156,
                "matched_fragments": 376,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004214175.1",
                "gtdb_species": "s__GCA-002733185 sp004214175",
                "ani": 85.2923,
                "matched_fragments": 289,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002713705.1",
                "gtdb_species": "s__GCA-002733185 sp002713705",
                "ani": 78.8033,
                "matched_fragments": 204,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018669795.1",
                "gtdb_species": "s__GCA-002733185 sp018669795",
                "ani": 78.7353,
                "matched_fragments": 207,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002733185.1",
                "gtdb_species": "s__GCA-002733185 sp002733185",
                "ani": 77.7383,
                "matched_fragments": 140,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003413745.1",
                "gtdb_species": "s__Marixanthomonas ophiurae",
                "ani": 77.1027,
                "matched_fragments": 51,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002631855.1",
                "gtdb_species": "s__Marixanthomonas sp002631855",
                "ani": 76.6624,
                "matched_fragments": 55,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019090365.1",
                "gtdb_species": "s__GCA-002733185 sp019090365",
                "ani": 76.4242,
                "matched_fragments": 79,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003443635.1",
                "gtdb_species": "s__AU392 sp003443635",
                "ani": 76.402,
                "matched_fragments": 64,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__AU392",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002375695.1",
                "gtdb_species": "s__Aequorivita sp002375695",
                "ani": 76.2971,
                "matched_fragments": 54,
                "total_fragments": 427,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.337,
        "cell_length": 0.308,
        "doubling_h": 1.285,
        "growth_tmp": 26.455,
        "optimum_tmp": 26.685,
        "optimum_ph": 7.271,
        "genome_size": 3861663.667,
        "gc_content": 35.517,
        "coding_genes": 2961.142,
        "rRNA16S_genes": 3.684,
        "tRNA_genes": 48.763,
        "gram_stain": 0.0,
        "sporulation": 0.007,
        "motility": 0.372,
        "range_salinity": 0.615,
        "facultative_respiration": 0.042,
        "anaerobic_respiration": 0.012,
        "aerobic_respiration": 0.945,
        "mesophilic_range_tmp": 0.898,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.101,
        "bacillus_cell_shape": 0.982,
        "coccus_cell_shape": 0.005,
        "filament_cell_shape": 0.002,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__GCA-002733185",
        "s__GCA-002733185 sp004213605"
    ],
    "_genome_taxon": [
        "Flavobacteriales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__GCA-002733185",
        "s__GCA-002733185 sp004213605",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Flavobacteriales",
        "Flavobacteriaceae",
        "GCA-002733185",
        "GCA-002733185",
        "sp004213605"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}