{ "type": "genome", "identifier": "GCA_004282995.1", "organism": "Sphingomonadaceae bacterium", "title": "Sphingomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004282995.1", "bioproject": "PRJNA515295", "biosample": "SAMN10793832", "wgs_master": "SHLU00000000.1", "refseq_category": "na", "taxid": "1930536", "species_taxid": "1930536", "organism_name": "Sphingomonadaceae bacterium", "infraspecific_name": "", "isolate": "GroopM.bin_3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/20", "asm_name": "ASM428299v1", "submitter": "University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/282/995/GCA_004282995.1_ASM428299v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-20", "dateModified": "2019-02-20", "datePublished": "2019-02-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonadaceae bacterium" ], "sample_taxid": [ "1930536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Melbourne, Middle Park Beach" ], "sample_host_location_id": [], "data_size": "0.550 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.35, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1939840", "Number of Sequences": "189", "Longest Sequences (bp)": "32940", "N50 (bp)": "11192", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "1749", "Average Protein Length": "305.3", "Coding Ratio (%)": "82.6", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.5812, "matched_fragments": 238, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.4003, "matched_fragments": 243, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.299, "matched_fragments": 264, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 78.2414, "matched_fragments": 221, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.1962, "matched_fragments": 216, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=CECT 8624", "accession": "GCA_014191645.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 78.1749, "matched_fragments": 208, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parerythrobacter jejuensis", "strain": "strain=JCM 16677", "accession": "GCA_009827995.1", "taxid": 795812, "species_taxid": 795812, "relation_to_type": "type", "validated": true, "ani": 78.1036, "matched_fragments": 277, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=S-5", "accession": "GCA_003363135.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 78.0812, "matched_fragments": 214, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 78.0031, "matched_fragments": 224, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 77.9963, "matched_fragments": 223, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 77.9616, "matched_fragments": 204, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 77.9286, "matched_fragments": 187, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania algicida", "strain": "strain=KEMB 9005-328", "accession": "GCA_009828025.1", "taxid": 1836209, "species_taxid": 1836209, "relation_to_type": "type", "validated": true, "ani": 77.8756, "matched_fragments": 181, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.8674, "matched_fragments": 201, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSM 17193", "accession": "GCA_002155305.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 77.8636, "matched_fragments": 199, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 77.8263, "matched_fragments": 199, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.7585, "matched_fragments": 213, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aerophila", "strain": "strain=GH25", "accession": "GCA_019711555.1", "taxid": 2867242, "species_taxid": 2867242, "relation_to_type": "type", "validated": true, "ani": 77.7207, "matched_fragments": 180, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 77.6652, "matched_fragments": 213, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter suaedae", "strain": "strain=GH3-15", "accession": "GCA_005434915.1", "taxid": 2545755, "species_taxid": 2545755, "relation_to_type": "type", "validated": true, "ani": 77.5741, "matched_fragments": 142, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter cryptus", "strain": "strain=DSM 12079", "accession": "GCA_000422985.1", "taxid": 196588, "species_taxid": 196588, "relation_to_type": "type", "validated": true, "ani": 77.4205, "matched_fragments": 195, "total_fragments": 554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"s__Altererythrobacter_D sp004282995", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Sphingomonadales", "Sphingomonadaceae", "Altererythrobacter", "D", "Altererythrobacter", "D", "sp004282995" ], "_meo": [ { "id": "MEO_0000192", "label": "beach sand" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }