{ "type": "genome", "identifier": "GCA_004292865.1", "organism": "Sphingobacteriales bacterium", "title": "Sphingobacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004292865.1", "bioproject": "PRJNA448579", "biosample": "SAMN10167104", "wgs_master": "RDXP00000000.1", "refseq_category": "na", "taxid": "2044944", "species_taxid": "2044944", "organism_name": "Sphingobacteriales bacterium", "infraspecific_name": "", "isolate": "PH2015_11S_37_14", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/22", "asm_name": "ASM429286v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/292/865/GCA_004292865.1_ASM429286v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-22", "dateModified": "2019-02-22", "datePublished": "2019-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacteriales bacterium" ], "sample_taxid": [ "2044944" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Eel River, Dobbyn Creek near Alderpoint" ], "sample_host_location_id": [], "data_size": "0.621 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2234571", "Number of Sequences": "219", "Longest Sequences (bp)": "57912", "N50 (bp)": "14097", "Gap Ratio (%)": "0.004833", "GCcontent (%)": "36.6", "Number of CDSs": "1794", "Average Protein Length": "315.7", "Coding Ratio (%)": "76.0", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, "species_taxid": 2571271, "relation_to_type": "type", "validated": true, "ani": 77.0675, "matched_fragments": 100, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter segetis", "strain": "strain=SD-b", "accession": "GCA_016623585.1", "taxid": 2793069, "species_taxid": 2793069, "relation_to_type": "type", "validated": true, "ani": 76.8485, "matched_fragments": 86, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrophilus", "strain": "strain=CCM 8644", "accession": "GCA_001652725.1", "taxid": 1826909, "species_taxid": 1826909, "relation_to_type": "type", "validated": true, "ani": 76.6958, "matched_fragments": 93, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter glucosidilyticus", "strain": "strain=DSM 23534", "accession": "GCA_000425145.1", "taxid": 1122941, "species_taxid": 1122941, "relation_to_type": "type", "validated": true, "ani": 76.6941, "matched_fragments": 79, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobium manganitolerans", "strain": "strain=YS-25", "accession": "GCA_003609575.1", "taxid": 1842495, "species_taxid": 1842495, "relation_to_type": "type", "validated": true, "ani": 76.4508, "matched_fragments": 81, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter soli", "strain": "strain=DSM 18609", "accession": "GCA_900101435.1", "taxid": 390242, "species_taxid": 390242, "relation_to_type": "type", "validated": true, "ani": 76.3265, "matched_fragments": 55, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryotolerans", "strain": "strain=AR-2-6", "accession": "GCA_005116475.1", "taxid": 2571270, "species_taxid": 2571270, "relation_to_type": "type", "validated": true, "ani": 76.1675, "matched_fragments": 51, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter polaris", "strain": "strain=RP-3-22", "accession": "GCA_005116505.1", "taxid": 2571273, "species_taxid": 2571273, "relation_to_type": "type", "validated": true, "ani": 76.1589, "matched_fragments": 51, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, 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