{ "type": "genome", "identifier": "GCA_004293075.1", "organism": "Oscillatoriales cyanobacterium", "title": "Oscillatoriales cyanobacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004293075.1", "bioproject": "PRJNA448579", "biosample": "SAMN10167092", "wgs_master": "RDYB00000000.1", "refseq_category": "na", "taxid": "1151", "species_taxid": "1151", "organism_name": "Oscillatoriales cyanobacterium", "infraspecific_name": "", "isolate": "PH2015_08U_46_180", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/22", "asm_name": "ASM429307v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/293/075/GCA_004293075.1_ASM429307v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-22", "dateModified": "2019-02-22", "datePublished": "2019-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Oscillatoriales cyanobacterium" ], "sample_taxid": [ "1151" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Eel River, South Fork Eel River near Phillipsville" ], "sample_host_location_id": [], "data_size": "2.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7270377", "Number of Sequences": "239", "Longest Sequences (bp)": "186018", "N50 (bp)": "60055", "Gap Ratio (%)": "0.006616", "GCcontent (%)": "45.8", "Number of CDSs": "5848", "Average Protein Length": "319.9", "Coding Ratio (%)": "77.2", "Number of rRNAs": "2", "Number of tRNAs": "76", "Number of CRISPRs": "25" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brasilonema bromeliae", "strain": "strain=SPC951", "accession": "GCA_012912135.1", "taxid": 383615, "species_taxid": 383615, "relation_to_type": "type", "validated": true, "ani": 76.3996, "matched_fragments": 81, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Argonema galeatum", "strain": "strain=A003/A1", "accession": "GCA_023333595.1", "taxid": 2942762, "species_taxid": 2942762, "relation_to_type": "type", "validated": true, "ani": 76.1521, "matched_fragments": 241, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Argonema antarcticum", "strain": "strain=A004/B2", "accession": "GCA_023333585.1", "taxid": 2942763, "species_taxid": 2942763, "relation_to_type": "type", "validated": true, "ani": 76.1374, "matched_fragments": 227, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brasilonema sennae", "strain": "strain=CENA114", "accession": "GCA_006968745.1", "taxid": 1397703, "species_taxid": 1397703, "relation_to_type": "type", "validated": true, "ani": 76.1047, "matched_fragments": 91, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anabaena cylindrica", "strain": "strain=PCC 7122", "accession": "GCA_000317695.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 75.9125, "matched_fragments": 91, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anabaena cylindrica", "strain": "strain=NIES-19", "accession": "GCA_002367955.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 75.898, "matched_fragments": 93, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc punctiforme", "strain": "strain=ATCC 29133; PCC 73102", "accession": "GCA_000020025.1", "taxid": 272131, "species_taxid": 272131, "relation_to_type": "type", "validated": true, "ani": 75.7446, "matched_fragments": 119, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Scytonema hofmannii", "strain": "strain=PCC 7110", "accession": "GCA_000346485.2", "taxid": 34078, "species_taxid": 34078, "relation_to_type": "type", "validated": true, "ani": 75.4358, "matched_fragments": 107, "total_fragments": 2308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moorena producens", 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