{
    "type": "genome",
    "identifier": "GCA_004293265.1",
    "organism": "Bacteroidota bacterium",
    "title": "Bacteroidota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004293265.1",
        "bioproject": "PRJNA448579",
        "biosample": "SAMN10167094",
        "wgs_master": "RDXZ00000000.1",
        "refseq_category": "na",
        "taxid": "1898104",
        "species_taxid": "1898104",
        "organism_name": "Bacteroidota bacterium",
        "infraspecific_name": "",
        "isolate": "PH2015_09S_30_10",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/22",
        "asm_name": "ASM429326v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/293/265/GCA_004293265.1_ASM429326v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-22",
    "dateModified": "2019-02-22",
    "datePublished": "2019-02-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidota bacterium"
        ],
        "sample_taxid": [
            "1898104"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California, Eel River, Middle Fork Eel River"
        ],
        "sample_host_location_id": [],
        "data_size": "1.101 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4033445",
        "Number of Sequences": "265",
        "Longest Sequences (bp)": "75455",
        "N50 (bp)": "20431",
        "Gap Ratio (%)": "0.000694",
        "GCcontent (%)": "30.2",
        "Number of CDSs": "3067",
        "Average Protein Length": "357.9",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bernardetia litoralis",
                "strain": "strain=DSM 6794",
                "accession": "GCA_000265505.1",
                "taxid": 999,
                "species_taxid": 999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9614,
                "matched_fragments": 122,
                "total_fragments": 1216,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Emticicia aquatilis",
                "strain": "strain=CGMCC 1.15958",
                "accession": "GCA_014644295.1",
                "taxid": 1537369,
                "species_taxid": 1537369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.821,
                "matched_fragments": 57,
                "total_fragments": 1216,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureibaculum marinum",
                "strain": "strain=BH-SD17",
                "accession": "GCA_003813905.1",
                "taxid": 2487930,
                "species_taxid": 2487930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6653,
                "matched_fragments": 54,
                "total_fragments": 1216,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004293265.1",
                "gtdb_species": "s__RDXZ01 sp004293265",
                "ani": 100.0,
                "matched_fragments": 1208,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__RDXZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013298075.1",
                "gtdb_species": "s__RDXZ01 sp013298075",
                "ani": 82.4813,
                "matched_fragments": 839,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__RDXZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004294005.1",
                "gtdb_species": "s__RDXZ01 sp004294005",
                "ani": 81.285,
                "matched_fragments": 550,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__RDXZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "97.30",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013297825.1",
                "gtdb_species": "s__JAAFIN01 sp013297825",
                "ani": 75.703,
                "matched_fragments": 284,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Microscillaceae;g__JAAFIN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001281695.1",
                "gtdb_species": "s__Raineya sp001281695",
                "ani": 74.902,
                "matched_fragments": 87,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Thermonemataceae;g__Raineya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188235.1",
                "gtdb_species": "s__Lutibacter agarilyticus",
                "ani": 74.7142,
                "matched_fragments": 54,
                "total_fragments": 1216,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Microscillaceae",
        "g__RDXZ01",
        "s__RDXZ01 sp004293265"
    ],
    "_genome_taxon": [
        "Bacteroidota",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Microscillaceae",
        "g__RDXZ01",
        "s__RDXZ01 sp004293265",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Microscillaceae",
        "RDXZ01",
        "RDXZ01",
        "sp004293265"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}