{ "type": "genome", "identifier": "GCA_004293375.1", "organism": "Nostocales cyanobacterium", "title": "Nostocales cyanobacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004293375.1", "bioproject": "PRJNA448579", "biosample": "SAMN10167083", "wgs_master": "RDYK00000000.1", "refseq_category": "na", "taxid": "2447902", "species_taxid": "2447902", "organism_name": "Nostocales cyanobacterium", "infraspecific_name": "", "isolate": "PH2015_08D_37_15", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/22", "asm_name": "ASM429337v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/293/375/GCA_004293375.1_ASM429337v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-22", "dateModified": "2019-02-22", "datePublished": "2019-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nostocales cyanobacterium PH2015_08D_37_15" ], "sample_taxid": [ "2480757" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Eel River, South Fork Eel River near Phillipsville" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3982087", "Number of Sequences": "603", "Longest Sequences (bp)": "41489", "N50 (bp)": "9811", "Gap Ratio (%)": "0.001256", "GCcontent (%)": "36.9", "Number of CDSs": "3147", "Average Protein Length": "289.0", "Coding Ratio (%)": "68.5", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anabaena cylindrica", "strain": "strain=NIES-19", "accession": "GCA_002367955.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 78.8378, "matched_fragments": 563, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anabaena cylindrica", "strain": "strain=PCC 7122", "accession": "GCA_000317695.1", "taxid": 1165, "species_taxid": 1165, "relation_to_type": "type", "validated": true, "ani": 78.792, "matched_fragments": 561, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cylindrospermopsis raciborskii", "strain": "strain=Cr2010", "accession": "GCA_003367075.2", "taxid": 77022, "species_taxid": 77022, "relation_to_type": "reftype", "validated": true, "ani": 77.2913, "matched_fragments": 232, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc favosum", "strain": "strain=CHAB 5714", "accession": "GCA_020829495.1", "taxid": 2907819, "species_taxid": 2907819, "relation_to_type": "type", "validated": true, "ani": 76.8122, "matched_fragments": 223, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc punctiforme", "strain": "strain=ATCC 29133; PCC 73102", "accession": "GCA_000020025.1", "taxid": 272131, "species_taxid": 272131, "relation_to_type": "type", "validated": true, "ani": 76.5201, "matched_fragments": 216, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Iningainema tapete", "strain": "strain=BLCC-T55", "accession": "GCA_014698965.1", "taxid": 2806730, "species_taxid": 2806730, "relation_to_type": "type", "validated": true, "ani": 76.3953, "matched_fragments": 131, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fischerella thermalis", "strain": "strain=PCC 7521", "accession": "GCA_000317225.1", "taxid": 372787, "species_taxid": 372787, "relation_to_type": "type", "validated": true, "ani": 76.2696, "matched_fragments": 170, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fischerella muscicola", "strain": "strain=PCC 7414", "accession": "GCA_000317205.1", "taxid": 92938, "species_taxid": 92938, "relation_to_type": "type", "validated": true, "ani": 76.2442, "matched_fragments": 174, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dulcicalothrix desertica", "strain": "strain=PCC 7102", "accession": "GCA_007830875.1", "taxid": 32056, "species_taxid": 32056, "relation_to_type": "type", "validated": true, "ani": 76.0315, "matched_fragments": 114, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planktothrix agardhii", "strain": "strain=NIES-204", "accession": "GCA_003609755.1", "taxid": 1160, "species_taxid": 1160, "relation_to_type": "type", "validated": true, "ani": 75.4441, "matched_fragments": 65, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyanobacterium aponinum", "strain": "strain=PCC 10605", "accession": "GCA_000317675.1", "taxid": 379064, "species_taxid": 379064, "relation_to_type": "type", "validated": true, "ani": 75.2506, "matched_fragments": 53, "total_fragments": 1014, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_004292695.1", 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680, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__RDYJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001586785.1", "gtdb_species": "s__Sphaerospermopsis_A aphanizomenoides_A", "ani": 80.281, "matched_fragments": 633, "total_fragments": 1014, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Sphaerospermopsis_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196515.1", "gtdb_species": "s__Trichormus_B azollae", "ani": 78.7541, "matched_fragments": 497, "total_fragments": 1014, 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