{ "type": "genome", "identifier": "GCA_004293485.1", "organism": "Sphingobacteriales bacterium", "title": "Sphingobacteriales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Jill Banfield's Lab at Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004293485.1", "bioproject": "PRJNA448579", "biosample": "SAMN10167071", "wgs_master": "RDYW00000000.1", "refseq_category": "na", "taxid": "2044944", "species_taxid": "2044944", "organism_name": "Sphingobacteriales bacterium", "infraspecific_name": "", "isolate": "PH2015_06S_36_19", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/22", "asm_name": "ASM429348v1", "submitter": "Jill Banfield's Lab at Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/293/485/GCA_004293485.1_ASM429348v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-22", "dateModified": "2019-02-22", "datePublished": "2019-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacteriales bacterium" ], "sample_taxid": [ "2044944" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California, Eel River, South Fork Eel River between Leggett and Piercy" ], "sample_host_location_id": [], "data_size": "0.617 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, 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"matched_fragments": 100, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrophilus", "strain": "strain=CCM 8644", "accession": "GCA_001652725.1", "taxid": 1826909, "species_taxid": 1826909, "relation_to_type": "type", "validated": true, "ani": 76.7835, "matched_fragments": 100, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter arcticus", "strain": "strain=A12", "accession": "GCA_000302595.1", "taxid": 752140, "species_taxid": 752140, "relation_to_type": "type", "validated": true, "ani": 76.7462, "matched_fragments": 81, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, "species_taxid": 2571271, "relation_to_type": "type", "validated": true, "ani": 76.5858, "matched_fragments": 118, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter puniceum", "strain": "strain=HX-22-1", "accession": "GCA_009674685.1", "taxid": 2666136, "species_taxid": 2666136, "relation_to_type": "type", "validated": true, "ani": 76.552, "matched_fragments": 85, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter planticolens", "strain": "strain=LMG 31464", "accession": "GCA_014172375.1", "taxid": 2679964, "species_taxid": 2679964, "relation_to_type": "type", "validated": true, "ani": 76.427, "matched_fragments": 57, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryotolerans", "strain": "strain=AR-2-6", "accession": "GCA_005116475.1", "taxid": 2571270, "species_taxid": 2571270, "relation_to_type": "type", "validated": true, "ani": 76.1201, "matched_fragments": 63, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 75.9982, "matched_fragments": 50, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004293485.1", "gtdb_species": "s__Pelobium sp004293485", "ani": 100.0, "matched_fragments": 690, "total_fragments": 694, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pelobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_004292865.1", "gtdb_species": "s__Pelobium sp004292865", "ani": 88.2678, 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