{
    "type": "genome",
    "identifier": "GCA_004294375.1",
    "organism": "Cytophagales bacterium",
    "title": "Cytophagales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004294375.1",
        "bioproject": "PRJNA448579",
        "biosample": "SAMN10167030",
        "wgs_master": "REAL00000000.1",
        "refseq_category": "na",
        "taxid": "2053541",
        "species_taxid": "2053541",
        "organism_name": "Cytophagales bacterium",
        "infraspecific_name": "",
        "isolate": "PH2015_02D_46_24",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/22",
        "asm_name": "ASM429437v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/294/375/GCA_004294375.1_ASM429437v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-22",
    "dateModified": "2019-02-22",
    "datePublished": "2019-02-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytophagales bacterium"
        ],
        "sample_taxid": [
            "2053541"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California, Eel River, South Fork Eel near Cedar Creek"
        ],
        "sample_host_location_id": [],
        "data_size": "1.229 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.29,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4353247",
        "Number of Sequences": "286",
        "Longest Sequences (bp)": "94549",
        "N50 (bp)": "22644",
        "Gap Ratio (%)": "0.001355",
        "GCcontent (%)": "46.0",
        "Number of CDSs": "3602",
        "Average Protein Length": "345.2",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Runella defluvii",
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                "status": "below_threshold"
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            {
                "organism_name": "Runella aurantiaca",
                "strain": "strain=YX9",
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                "taxid": 2282308,
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                "validated": true,
                "ani": 76.2038,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Runella rosea",
                "strain": "strain=HYN0085",
                "accession": "GCA_003325355.1",
                "taxid": 2259595,
                "species_taxid": 2259595,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2004,
                "matched_fragments": 187,
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                "status": "below_threshold"
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            {
                "organism_name": "Runella limosa",
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                "accession": "GCA_000482465.1",
                "taxid": 370978,
                "species_taxid": 370978,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1988,
                "matched_fragments": 187,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Runella zeae",
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                "accession": "GCA_000423565.1",
                "taxid": 94255,
                "species_taxid": 94255,
                "relation_to_type": "type",
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                "ani": 76.0492,
                "matched_fragments": 147,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rudanella lutea",
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                "accession": "GCA_000383955.1",
                "taxid": 451374,
                "species_taxid": 451374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3584,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rudanella paleaurantiibacter",
                "strain": "strain=HX-22-17",
                "accession": "GCA_009184635.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3095,
                "matched_fragments": 60,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013298215.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_009905605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Runella",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "REAB01",
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        "sp004293645"
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    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}