{
    "type": "genome",
    "identifier": "GCA_004294865.1",
    "organism": "Gottschalkiaceae bacterium",
    "title": "Gottschalkiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Darwin Bioprospecting Excellence SL",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004294865.1",
        "bioproject": "PRJNA520828",
        "biosample": "SAMN10868516",
        "wgs_master": "SHOK00000000.1",
        "refseq_category": "na",
        "taxid": "2527676",
        "species_taxid": "2527676",
        "organism_name": "Gottschalkiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "MAG10",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/24",
        "asm_name": "ASM429486v1",
        "submitter": "Darwin Bioprospecting Excellence SL",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/294/865/GCA_004294865.1_ASM429486v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-24",
    "dateModified": "2019-02-24",
    "datePublished": "2019-02-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gottschalkiaceae bacterium"
        ],
        "sample_taxid": [
            "2527676"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany:Jena"
        ],
        "sample_host_location_id": [],
        "data_size": "0.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 33.33,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1617995",
        "Number of Sequences": "350",
        "Longest Sequences (bp)": "26803",
        "N50 (bp)": "7696",
        "Gap Ratio (%)": "0.019160",
        "GCcontent (%)": "31.6",
        "Number of CDSs": "1386",
        "Average Protein Length": "282.9",
        "Coding Ratio (%)": "72.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "10",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Proteiniborus ethanoligenes",
                "strain": "strain=DSM 21650",
                "accession": "GCA_900107485.1",
                "taxid": 415015,
                "species_taxid": 415015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.2607,
                "matched_fragments": 320,
                "total_fragments": 365,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 33.33,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900107485.1",
                "gtdb_species": "s__Proteiniborus ethanoligenes",
                "ani": 99.2607,
                "matched_fragments": 320,
                "total_fragments": 365,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Proteiniboraceae;g__Proteiniborus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002376545.1",
                "gtdb_species": "s__Proteiniborus sp002376545",
                "ani": 77.9919,
                "matched_fragments": 120,
                "total_fragments": 365,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Proteiniboraceae;g__Proteiniborus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900095305.1",
                "gtdb_species": "s__Proteiniborus sp900095305",
                "ani": 77.8353,
                "matched_fragments": 119,
                "total_fragments": 365,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Proteiniboraceae;g__Proteiniborus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.073,
        "cell_length": 0.435,
        "doubling_h": -0.001,
        "growth_tmp": 36.666,
        "optimum_tmp": 36.5,
        "optimum_ph": 7.4,
        "genome_size": 2945940.133,
        "gc_content": 29.533,
        "coding_genes": 2819.0,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 81.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.5,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Proteiniboraceae",
        "g__Proteiniborus",
        "s__Proteiniborus ethanoligenes"
    ],
    "_genome_taxon": [
        "Gottschalkiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Proteiniboraceae",
        "g__Proteiniborus",
        "s__Proteiniborus ethanoligenes",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Tissierellales",
        "Proteiniboraceae",
        "Proteiniborus",
        "Proteiniborus",
        "ethanoligenes"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}