{
    "type": "genome",
    "identifier": "GCA_004295175.1",
    "organism": "Oscillatoriales cyanobacterium",
    "title": "Oscillatoriales cyanobacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004295175.1",
        "bioproject": "PRJNA448579",
        "biosample": "SAMN10167031",
        "wgs_master": "REAK00000000.1",
        "refseq_category": "na",
        "taxid": "1151",
        "species_taxid": "1151",
        "organism_name": "Oscillatoriales cyanobacterium",
        "infraspecific_name": "",
        "isolate": "PH2015_02D_45_1038",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/22",
        "asm_name": "ASM429517v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/295/175/GCA_004295175.1_ASM429517v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-22",
    "dateModified": "2019-02-22",
    "datePublished": "2019-02-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillatoriales cyanobacterium"
        ],
        "sample_taxid": [
            "1151"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California, Eel River, South Fork Eel near Cedar Creek"
        ],
        "sample_host_location_id": [],
        "data_size": "1.713 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 0.9,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6026229",
        "Number of Sequences": "245",
        "Longest Sequences (bp)": "115911",
        "N50 (bp)": "37060",
        "Gap Ratio (%)": "0.006488",
        "GCcontent (%)": "45.4",
        "Number of CDSs": "5158",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "75.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Argonema antarcticum",
                "strain": "strain=A004/B2",
                "accession": "GCA_023333585.1",
                "taxid": 2942763,
                "species_taxid": 2942763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4267,
                "matched_fragments": 182,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Argonema galeatum",
                "strain": "strain=A003/A1",
                "accession": "GCA_023333595.1",
                "taxid": 2942762,
                "species_taxid": 2942762,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1791,
                "matched_fragments": 202,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliterella atlantica",
                "strain": "strain=CENA595",
                "accession": "GCA_000952155.1",
                "taxid": 1827278,
                "species_taxid": 1827278,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1657,
                "matched_fragments": 72,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brasilonema sennae",
                "strain": "strain=CENA114",
                "accession": "GCA_006968745.1",
                "taxid": 1397703,
                "species_taxid": 1397703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9696,
                "matched_fragments": 88,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brasilonema bromeliae",
                "strain": "strain=SPC951",
                "accession": "GCA_012912135.1",
                "taxid": 383615,
                "species_taxid": 383615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8436,
                "matched_fragments": 64,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=PCC 7122",
                "accession": "GCA_000317695.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8061,
                "matched_fragments": 85,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=NIES-19",
                "accession": "GCA_002367955.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7867,
                "matched_fragments": 87,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6908,
                "matched_fragments": 110,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iningainema tapete",
                "strain": "strain=BLCC-T55",
                "accession": "GCA_014698965.1",
                "taxid": 2806730,
                "species_taxid": 2806730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5644,
                "matched_fragments": 96,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Scytonema hofmannii",
                "strain": "strain=PCC 7110",
                "accession": "GCA_000346485.2",
                "taxid": 34078,
                "species_taxid": 34078,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4346,
                "matched_fragments": 112,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Baaleninema simplex",
                "strain": "strain=PCC 7105",
                "accession": "GCA_000332355.1",
                "taxid": 2862350,
                "species_taxid": 2862350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.392,
                "matched_fragments": 64,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnospira indica",
                "strain": "strain=PCC 8005",
                "accession": "GCA_000973065.1",
                "taxid": 147322,
                "species_taxid": 147322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3864,
                "matched_fragments": 64,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnospira indica",
                "strain": "strain=PCC 8005",
                "accession": "GCA_000176895.2",
                "taxid": 147322,
                "species_taxid": 147322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3199,
                "matched_fragments": 60,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 0.9,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004292955.1",
                "gtdb_species": "s__Microcoleus sp004292955",
                "ani": 98.9429,
                "matched_fragments": 1786,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013299185.1",
                "gtdb_species": "s__Microcoleus sp013299185",
                "ani": 94.7459,
                "matched_fragments": 1669,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004293365.1",
                "gtdb_species": "s__Microcoleus sp004293365",
                "ani": 92.7622,
                "matched_fragments": 1587,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_013299165.1",
                "gtdb_species": "s__Microcoleus sp013299165",
                "ani": 88.8195,
                "matched_fragments": 1553,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003003725.1",
                "gtdb_species": "s__Microcoleus sp003003725",
                "ani": 87.199,
                "matched_fragments": 1241,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015207455.1",
                "gtdb_species": "s__Microcoleus sp015207455",
                "ani": 87.1697,
                "matched_fragments": 1348,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015207505.1",
                "gtdb_species": "s__Microcoleus sp015207505",
                "ani": 86.9825,
                "matched_fragments": 1382,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.23",
                "min_intra_species_ani": "96.23",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013179805.1",
                "gtdb_species": "s__Microcoleus asticus",
                "ani": 86.8832,
                "matched_fragments": 1412,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014695295.1",
                "gtdb_species": "s__Microcoleus sp014695295",
                "ani": 86.8365,
                "matched_fragments": 1411,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000214075.1",
                "gtdb_species": "s__Microcoleus vaginatus",
                "ani": 86.5756,
                "matched_fragments": 1389,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317475.1",
                "gtdb_species": "s__Microcoleus sp000317475",
                "ani": 86.5685,
                "matched_fragments": 1471,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003542015.1",
                "gtdb_species": "s__Microcoleus sp003542015",
                "ani": 83.6071,
                "matched_fragments": 1019,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002412335.2",
                "gtdb_species": "s__Microcoleus bourrellyi",
                "ani": 83.1077,
                "matched_fragments": 1039,
                "total_fragments": 1887,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.397,
        "cell_length": 0.602,
        "doubling_h": 1.2,
        "growth_tmp": 21.7,
        "optimum_tmp": 27.0,
        "optimum_ph": 9.5,
        "genome_size": 5876746.851,
        "gc_content": 42.975,
        "coding_genes": 6233.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 60.0,
        "gram_stain": 0.111,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.8,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.2
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Microcoleus",
        "s__Microcoleus sp004292955"
    ],
    "_genome_taxon": [
        "Oscillatoriales",
        "cyanobacterium",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Microcoleus",
        "s__Microcoleus sp004292955",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcoleaceae",
        "Microcoleus",
        "Microcoleus",
        "sp004292955"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}