{
    "type": "genome",
    "identifier": "GCA_004295255.1",
    "organism": "Sphingobacteriia bacterium",
    "title": "Sphingobacteriia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004295255.1",
        "bioproject": "PRJNA448579",
        "biosample": "SAMN10167021",
        "wgs_master": "REAU00000000.1",
        "refseq_category": "na",
        "taxid": "2035813",
        "species_taxid": "2035813",
        "organism_name": "Sphingobacteriia bacterium",
        "infraspecific_name": "",
        "isolate": "PH2015_01D_37_39",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/22",
        "asm_name": "ASM429525v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/295/255/GCA_004295255.1_ASM429525v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-22",
    "dateModified": "2019-02-22",
    "datePublished": "2019-02-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobacteriia bacterium"
        ],
        "sample_taxid": [
            "2035813"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California, Eel River, Elder Creek"
        ],
        "sample_host_location_id": [],
        "data_size": "0.698 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2467712",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "277709",
        "N50 (bp)": "84604",
        "Gap Ratio (%)": "0.001013",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "2073",
        "Average Protein Length": "357.4",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 426421,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminibacterium goheungense",
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                "accession": "GCA_004361915.1",
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                "species_taxid": 1086393,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
                "organism_name": "Hydrotalea lipotrueae",
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                "accession": "GCA_019249625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Panacibacter ginsenosidivorans",
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                "accession": "GCA_007971225.1",
                "taxid": 1813871,
                "species_taxid": 1813871,
                "relation_to_type": "type",
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                "ani": 76.018,
                "matched_fragments": 50,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea flava",
                "strain": "strain=CCUG 51397",
                "accession": "GCA_001623405.1",
                "taxid": 714549,
                "species_taxid": 714549,
                "relation_to_type": "suspected-type",
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                "total_fragments": 796,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea sandarakina",
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                "accession": "GCA_003254115.1",
                "taxid": 1004304,
                "species_taxid": 1004304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7536,
                "matched_fragments": 70,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_004294135.1",
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                "matched_fragments": 681,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
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            {
                "accession": "GCA_013297995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002281875.1",
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                "matched_fragments": 227,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.97",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_001829005.1",
                "gtdb_species": "s__Sediminibacterium sp001829005",
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                "matched_fragments": 231,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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            },
            {
                "accession": "GCA_002281575.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002786355.1",
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                "num_clustered_genomes": 2,
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            {
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_004294465.1",
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                "matched_fragments": 141,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
        "doubling_h": null,
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        "genome_size": null,
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        "rRNA16S_genes": null,
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        "gram_stain": null,
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        "motility": null,
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        "facultative_respiration": null,
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        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
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        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
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        "g__Sediminibacterium",
        "s__Sediminibacterium sp004294135"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Bacteroidota",
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        "o__Chitinophagales",
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        "Chitinophagales",
        "Chitinophagaceae",
        "Sediminibacterium",
        "Sediminibacterium",
        "sp004294135"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}