{ "type": "genome", "identifier": "GCA_004297005.1", "organism": "Sinobacteraceae bacterium", "title": "Sinobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004297005.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720232", "wgs_master": "SCVA00000000.1", "refseq_category": "na", "taxid": "1969813", "species_taxid": "1969813", "organism_name": "Sinobacteraceae bacterium", "infraspecific_name": "", "isolate": "GW715_bin.28", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/25", "asm_name": "ASM429700v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/297/005/GCA_004297005.1_ASM429700v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-25", "dateModified": "2019-02-25", "datePublished": "2019-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinobacteraceae bacterium" ], "sample_taxid": [ "1969813" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "0.979 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3572902", "Number of Sequences": "63", "Longest Sequences (bp)": "199209", "N50 (bp)": "99515", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "3184", "Average Protein Length": "339.8", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Solimonas fluminis", "strain": "strain=HR-BB", "accession": "GCA_002930645.1", "taxid": 2086571, "species_taxid": 2086571, "relation_to_type": "type", "validated": true, "ani": 79.4842, "matched_fragments": 530, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 78.9012, "matched_fragments": 485, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", 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"matched_fragments": 383, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas terrae", "strain": "strain=KIS83-12", "accession": "GCA_011067135.1", "taxid": 1396819, "species_taxid": 1396819, "relation_to_type": "type", "validated": true, "ani": 77.9717, "matched_fragments": 384, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga daqingensis", "strain": "strain=CGMCC 1.7049", "accession": "GCA_900129825.1", "taxid": 490188, "species_taxid": 490188, "relation_to_type": "type", "validated": true, "ani": 77.9017, "matched_fragments": 321, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flagellatimonas centrodinii", "strain": "strain=R2A-3", "accession": "GCA_016918765.2", "taxid": 2806210, "species_taxid": 2806210, "relation_to_type": "type", "validated": true, "ani": 77.7818, "matched_fragments": 300, "total_fragments": 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