{
    "type": "genome",
    "identifier": "GCA_004298335.1",
    "organism": "Nitrospirota bacterium",
    "title": "Nitrospirota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004298335.1",
        "bioproject": "PRJNA514088",
        "biosample": "SAMN10720186",
        "wgs_master": "SCTG00000000.1",
        "refseq_category": "na",
        "taxid": "2026887",
        "species_taxid": "2026887",
        "organism_name": "Nitrospirota bacterium",
        "infraspecific_name": "",
        "isolate": "FW300_bin.52",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/25",
        "asm_name": "ASM429833v1",
        "submitter": "University of Oklahoma",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/298/335/GCA_004298335.1_ASM429833v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-25",
    "dateModified": "2019-02-25",
    "datePublished": "2019-02-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospirota bacterium"
        ],
        "sample_taxid": [
            "2026887"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Tennessee"
        ],
        "sample_host_location_id": [],
        "data_size": "0.753 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2658979",
        "Number of Sequences": "250",
        "Longest Sequences (bp)": "98754",
        "N50 (bp)": "26967",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.0",
        "Number of CDSs": "2556",
        "Average Protein Length": "292.1",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2893,
                "matched_fragments": 117,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=DSM 21585",
                "accession": "GCA_900188055.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.204,
                "matched_fragments": 90,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=USBA 355",
                "accession": "GCA_900177295.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1902,
                "matched_fragments": 91,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004298335.1",
                "gtdb_species": "s__SCTG01 sp004298335",
                "ani": 100.0,
                "matched_fragments": 754,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__SCTG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_005877615.1",
                "gtdb_species": "s__NS-12 sp005877615",
                "ani": 80.7942,
                "matched_fragments": 320,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__NS-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005877565.1",
                "gtdb_species": "s__NS-12 sp005877565",
                "ani": 80.5239,
                "matched_fragments": 351,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__NS-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005877855.1",
                "gtdb_species": "s__NS-12 sp005877855",
                "ani": 80.1394,
                "matched_fragments": 320,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__NS-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005877505.1",
                "gtdb_species": "s__NS-12 sp005877505",
                "ani": 79.9184,
                "matched_fragments": 293,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__NS-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004296885.1",
                "gtdb_species": "s__SYGV01 sp004296885",
                "ani": 77.3815,
                "matched_fragments": 135,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__SYGV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005877815.1",
                "gtdb_species": "s__NS-4 sp005877815",
                "ani": 77.024,
                "matched_fragments": 140,
                "total_fragments": 761,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__NS-4;g__NS-4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__NS-4",
        "g__SCTG01",
        "s__SCTG01 sp004298335"
    ],
    "_genome_taxon": [
        "Nitrospirota",
        "bacterium",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__NS-4",
        "g__SCTG01",
        "s__SCTG01 sp004298335",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "NS-4",
        "SCTG01",
        "SCTG01",
        "sp004298335"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}