{ "type": "genome", "identifier": "GCA_004298745.1", "organism": "Sinobacteraceae bacterium", "title": "Sinobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004298745.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720144", "wgs_master": "SCRQ00000000.1", "refseq_category": "na", "taxid": "1969813", "species_taxid": "1969813", "organism_name": "Sinobacteraceae bacterium", "infraspecific_name": "", "isolate": "FW106_bin.9", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/25", "asm_name": "ASM429874v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/298/745/GCA_004298745.1_ASM429874v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-25", "dateModified": "2019-02-25", "datePublished": "2019-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinobacteraceae bacterium" ], "sample_taxid": [ "1969813" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.8, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4013240", "Number of Sequences": "336", "Longest Sequences (bp)": "123784", "N50 (bp)": "17717", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "3395", "Average Protein Length": "323.0", "Coding Ratio (%)": "82.0", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Solimonas fluminis", "strain": "strain=HR-BB", "accession": "GCA_002930645.1", "taxid": 2086571, "species_taxid": 2086571, "relation_to_type": "type", "validated": true, "ani": 79.2278, "matched_fragments": 494, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas aquatica", "strain": "strain=DSM 25927", "accession": "GCA_900111015.1", "taxid": 489703, "species_taxid": 489703, "relation_to_type": "type", "validated": true, "ani": 78.6585, "matched_fragments": 421, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", 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415849, "relation_to_type": "type", "validated": true, "ani": 78.4544, "matched_fragments": 459, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia ramosa", "strain": "strain=DSM 11499", "accession": "GCA_000420645.1", "taxid": 64002, "species_taxid": 64002, "relation_to_type": "type", "validated": true, "ani": 77.9335, "matched_fragments": 328, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga effusa", "strain": "strain=AP103", "accession": "GCA_000271305.1", "taxid": 243629, "species_taxid": 243629, "relation_to_type": "type", "validated": true, "ani": 77.9272, "matched_fragments": 355, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacagrimonas perspica", "strain": "strain=DSM 26377", "accession": "GCA_004364935.1", "taxid": 381431, "species_taxid": 381431, "relation_to_type": "type", "validated": true, "ani": 77.8781, "matched_fragments": 341, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrocarboniphaga daqingensis", "strain": "strain=CGMCC 1.7049", "accession": "GCA_900129825.1", "taxid": 490188, "species_taxid": 490188, "relation_to_type": "type", "validated": true, "ani": 77.8702, "matched_fragments": 290, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas marina", "strain": "strain=C16B3", "accession": "GCA_012241385.1", "taxid": 2714601, "species_taxid": 2714601, "relation_to_type": "type", "validated": true, "ani": 77.7916, "matched_fragments": 349, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flagellatimonas centrodinii", "strain": "strain=R2A-3", "accession": "GCA_016918765.2", "taxid": 2806210, "species_taxid": 2806210, "relation_to_type": "type", "validated": true, "ani": 77.7235, "matched_fragments": 260, 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