{ "type": "genome", "identifier": "GCA_004321985.1", "organism": "Castellaniella sp.", "title": "Castellaniella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004321985.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720115", "wgs_master": "SCQN00000000.1", "refseq_category": "na", "taxid": "1955812", "species_taxid": "1955812", "organism_name": "Castellaniella sp.", "infraspecific_name": "", "isolate": "FW021_bin.21", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/25", "asm_name": "ASM432198v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/321/985/GCA_004321985.1_ASM432198v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-25", "dateModified": "2019-02-25", "datePublished": "2019-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Castellaniella sp." ], "sample_taxid": [ "1955812" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "0.960 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.93, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3407388", "Number of Sequences": "86", "Longest Sequences (bp)": "397654", "N50 (bp)": "110967", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "3197", "Average Protein Length": "318.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 80.5639, "matched_fragments": 489, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 80.5069, "matched_fragments": 517, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapusillimonas granuli", "strain": "strain=DSM 18079", "accession": "GCA_014202705.1", 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"type", "validated": true, "ani": 77.7044, "matched_fragments": 252, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas caeni", "strain": "strain=KCTC 42353", "accession": "GCA_003545815.1", "taxid": 1348472, "species_taxid": 1348472, "relation_to_type": "type", "validated": true, "ani": 77.6283, "matched_fragments": 228, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pulmonis", "strain": "strain=LMG 26696", "accession": "GCA_902859765.1", "taxid": 1389932, "species_taxid": 1389932, "relation_to_type": "type", "validated": true, "ani": 77.5714, "matched_fragments": 268, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 77.53, "matched_fragments": 295, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter animicus", "strain": "strain=LMG 26690", "accession": "GCA_902859585.1", "taxid": 1389935, "species_taxid": 1389935, "relation_to_type": "type", "validated": true, "ani": 77.4665, "matched_fragments": 257, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 77.386, "matched_fragments": 278, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter mucicolens", "strain": "strain=LMG 26685", "accession": "GCA_902859725.1", "taxid": 1389922, "species_taxid": 1389922, "relation_to_type": "type", "validated": true, "ani": 77.385, "matched_fragments": 254, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracandidimonas soli", "strain": "strain=DSM 100048", "accession": "GCA_004342005.1", "taxid": 1917182, "species_taxid": 1917182, "relation_to_type": "type", "validated": true, "ani": 77.3617, "matched_fragments": 229, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 77.3145, "matched_fragments": 285, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 77.2141, "matched_fragments": 294, "total_fragments": 1096, "ani_threshold": 95, "status": 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"strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 76.1002, "matched_fragments": 157, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 76.0745, "matched_fragments": 139, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 75.894, "matched_fragments": 133, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 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