{ "type": "genome", "identifier": "GCA_004322045.1", "organism": "Paraburkholderia sp.", "title": "Paraburkholderia sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004322045.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720141", "wgs_master": "SCRN00000000.1", "refseq_category": "na", "taxid": "1926495", "species_taxid": "1926495", "organism_name": "Paraburkholderia sp.", "infraspecific_name": "", "isolate": "FW106_bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/25", "asm_name": "ASM432204v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/322/045/GCA_004322045.1_ASM432204v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-25", "dateModified": "2019-02-25", "datePublished": "2019-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia sp." ], "sample_taxid": [ "1926495" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "1.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 16.67, "strain_heterogeneity": 6.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5993192", "Number of Sequences": "54", "Longest Sequences (bp)": "560023", "N50 (bp)": "199946", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "5450", "Average Protein Length": "317.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Trinickia soli", "strain": "strain=LMG 24076", "accession": "GCA_902859815.1", "taxid": 380675, "species_taxid": 380675, "relation_to_type": "type", "validated": true, "ani": 83.2931, "matched_fragments": 1251, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia soli", "strain": "strain=GP25-8", "accession": "GCA_002879855.1", "taxid": 380675, "species_taxid": 380675, "relation_to_type": "type", "validated": true, "ani": 83.2604, "matched_fragments": 1250, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia dabaoshanensis", "strain": "strain=GIMN1.004", "accession": "GCA_002879885.1", "taxid": 564714, 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1975, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 16.67, "strain_heterogeneity": 6.67 }, "gtdb_result": [ { "accession": "GCA_004322045.1", "gtdb_species": "s__Trinickia sp004322045", "ani": 100.0, "matched_fragments": 1970, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "96.62", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002879855.1", "gtdb_species": "s__Trinickia soli", "ani": 83.2495, "matched_fragments": 1251, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", 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