{
    "type": "genome",
    "identifier": "GCA_004322185.1",
    "organism": "Candidimonas sp.",
    "title": "Candidimonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004322185.1",
        "bioproject": "PRJNA514088",
        "biosample": "SAMN10720161",
        "wgs_master": "SCSH00000000.1",
        "refseq_category": "na",
        "taxid": "1912597",
        "species_taxid": "1912597",
        "organism_name": "Candidimonas sp.",
        "infraspecific_name": "",
        "isolate": "FW106-10_bin.31",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/25",
        "asm_name": "ASM432218v1",
        "submitter": "University of Oklahoma",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/322/185/GCA_004322185.1_ASM432218v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-25",
    "dateModified": "2019-02-25",
    "datePublished": "2019-02-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidimonas sp."
        ],
        "sample_taxid": [
            "1912597"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Tennessee"
        ],
        "sample_host_location_id": [],
        "data_size": "1.162 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4061035",
        "Number of Sequences": "333",
        "Longest Sequences (bp)": "60718",
        "N50 (bp)": "20711",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.9",
        "Number of CDSs": "3688",
        "Average Protein Length": "301.9",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paralcaligenes ureilyticus",
                "strain": "strain=DSM 24591",
                "accession": "GCA_004346225.1",
                "taxid": 627131,
                "species_taxid": 627131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7144,
                "matched_fragments": 836,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidimonas humi",
                "strain": "strain=DSM 25336",
                "accession": "GCA_019166065.1",
                "taxid": 683355,
                "species_taxid": 683355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7711,
                "matched_fragments": 333,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=PB3-7B",
                "accession": "GCA_022688825.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7699,
                "matched_fragments": 215,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidimonas nitroreducens",
                "strain": "strain=SC-089",
                "accession": "GCA_002209565.1",
                "taxid": 683354,
                "species_taxid": 683354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7522,
                "matched_fragments": 317,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=PB3-7B",
                "accession": "GCA_013416545.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7047,
                "matched_fragments": 213,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=DSM 25520",
                "accession": "GCA_003315175.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6921,
                "matched_fragments": 217,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas noertemannii",
                "strain": "strain=DSM 10065",
                "accession": "GCA_003545825.1",
                "taxid": 305977,
                "species_taxid": 305977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4965,
                "matched_fragments": 206,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas caeni",
                "strain": "strain=KCTC 42353",
                "accession": "GCA_003545815.1",
                "taxid": 1348472,
                "species_taxid": 1348472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4962,
                "matched_fragments": 184,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapusillimonas granuli",
                "strain": "strain=LMG 24012",
                "accession": "GCA_013416525.1",
                "taxid": 380911,
                "species_taxid": 380911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3993,
                "matched_fragments": 222,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapusillimonas granuli",
                "strain": "strain=DSM 18079",
                "accession": "GCA_014202705.1",
                "taxid": 380911,
                "species_taxid": 380911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.396,
                "matched_fragments": 225,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas minor",
                "strain": "strain=YC-7-48",
                "accession": "GCA_014237865.1",
                "taxid": 2697024,
                "species_taxid": 2697024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3753,
                "matched_fragments": 145,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=18323",
                "accession": "GCA_000306945.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9018,
                "matched_fragments": 180,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=FDAARGOS_1543",
                "accession": "GCA_020736265.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8637,
                "matched_fragments": 182,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter pulmonis",
                "strain": "strain=LMG 26696",
                "accession": "GCA_902859765.1",
                "taxid": 1389932,
                "species_taxid": 1389932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.658,
                "matched_fragments": 191,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas faecipullorum",
                "strain": "strain=CC-YST705",
                "accession": "GCA_020539505.1",
                "taxid": 2755040,
                "species_taxid": 2755040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5873,
                "matched_fragments": 95,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia silviterrae",
                "strain": "strain=4M-K11",
                "accession": "GCA_004353915.1",
                "taxid": 2528715,
                "species_taxid": 2528715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7162,
                "matched_fragments": 69,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004297945.1",
                "gtdb_species": "s__Paralcaligenes sp004297945",
                "ani": 99.6867,
                "matched_fragments": 824,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paralcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004346225.1",
                "gtdb_species": "s__Paralcaligenes ureilyticus",
                "ani": 86.7175,
                "matched_fragments": 836,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paralcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019166065.1",
                "gtdb_species": "s__Candidimonas humi",
                "ani": 77.7795,
                "matched_fragments": 332,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002209565.1",
                "gtdb_species": "s__Candidimonas nitroreducens",
                "ani": 77.752,
                "matched_fragments": 317,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003315175.1",
                "gtdb_species": "s__Eoetvoesia caeni",
                "ani": 77.6771,
                "matched_fragments": 218,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Eoetvoesia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900129885.1",
                "gtdb_species": "s__Candidimonas_A bauzanensis",
                "ani": 77.5824,
                "matched_fragments": 284,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013416445.1",
                "gtdb_species": "s__Candidimonas_A sp013416445",
                "ani": 77.529,
                "matched_fragments": 218,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004339425.1",
                "gtdb_species": "s__Candidimonas_A sp004339425",
                "ani": 77.4224,
                "matched_fragments": 219,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004022565.1",
                "gtdb_species": "s__Pusillimonas_D thiosulfatoxidans",
                "ani": 77.4151,
                "matched_fragments": 188,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017745595.1",
                "gtdb_species": "s__Bordetella_A petrii_C",
                "ani": 77.1784,
                "matched_fragments": 207,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002261265.1",
                "gtdb_species": "s__Bordetella_A sp002261265",
                "ani": 76.7228,
                "matched_fragments": 181,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002192695.1",
                "gtdb_species": "s__Achromobacter xylosoxidans_C",
                "ani": 76.6633,
                "matched_fragments": 188,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.19,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 5641410.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paralcaligenes",
        "s__Paralcaligenes sp004297945"
    ],
    "_genome_taxon": [
        "Candidimonas",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paralcaligenes",
        "s__Paralcaligenes sp004297945",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Paralcaligenes",
        "Paralcaligenes",
        "sp004297945"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}