{ "type": "genome", "identifier": "GCA_004322525.1", "organism": "Lysobacter sp.", "title": "Lysobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004322525.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720230", "wgs_master": "SCUY00000000.1", "refseq_category": "na", "taxid": "72226", "species_taxid": "72226", "organism_name": "Lysobacter sp.", "infraspecific_name": "", "isolate": "GW715_bin.24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/01", "asm_name": "ASM432252v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/322/525/GCA_004322525.1_ASM432252v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-01", "dateModified": "2019-03-01", "datePublished": "2019-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter sp." ], "sample_taxid": [ "72226" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "0.662 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2397920", "Number of Sequences": "318", "Longest Sequences (bp)": "42137", "N50 (bp)": "10857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "1981", "Average Protein Length": "311.4", "Coding Ratio (%)": "77.2", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 82.3863, "matched_fragments": 454, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter xinjiangensis", "strain": "strain=KCTC 22558", "accession": "GCA_014651995.1", "taxid": 546892, "species_taxid": 546892, "relation_to_type": "type", "validated": true, "ani": 82.274, "matched_fragments": 474, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter lacus", "strain": "strain=UKS-15", "accession": "GCA_008274655.1", "taxid": 1643323, "species_taxid": 1643323, "relation_to_type": "type", "validated": true, "ani": 81.4715, "matched_fragments": 403, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter terrigena", "strain": "strain=17J7-1", "accession": "GCA_004361065.1", "taxid": 2488749, "species_taxid": 2488749, "relation_to_type": "type", "validated": true, "ani": 81.3103, "matched_fragments": 461, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 80.2815, "matched_fragments": 373, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter bugurensis", "strain": "strain=KCTC 23077", "accession": "GCA_014652095.1", "taxid": 543356, "species_taxid": 543356, "relation_to_type": "type", "validated": true, "ani": 79.9682, "matched_fragments": 350, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 79.9669, "matched_fragments": 382, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 79.9156, "matched_fragments": 379, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 79.736, "matched_fragments": 366, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 79.6337, "matched_fragments": 334, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 79.5987, "matched_fragments": 371, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter solisilvae", "strain": "strain=R19", "accession": "GCA_016613535.2", "taxid": 2763317, "species_taxid": 2763317, "relation_to_type": "type", "validated": true, "ani": 79.565, "matched_fragments": 370, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 79.3392, "matched_fragments": 355, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 79.3195, "matched_fragments": 310, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 79.2963, "matched_fragments": 337, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 79.2587, "matched_fragments": 347, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 79.2517, "matched_fragments": 319, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 79.2424, "matched_fragments": 353, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 79.2045, "matched_fragments": 289, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 79.1951, "matched_fragments": 329, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas huabeiensis", "strain": "strain=HB2", "accession": "GCA_000559025.1", "taxid": 1244513, "species_taxid": 1244513, "relation_to_type": "type", "validated": true, "ani": 79.1929, "matched_fragments": 314, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas gilva", "strain": "strain=H23", "accession": "GCA_005239095.1", "taxid": 2572684, "species_taxid": 2572684, "relation_to_type": "type", "validated": true, "ani": 79.0095, "matched_fragments": 287, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 78.7706, "matched_fragments": 316, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 78.4899, "matched_fragments": 342, "total_fragments": 633, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004322525.1", "gtdb_species": "s__Lysobacter sp004322525", "ani": 100.0, "matched_fragments": 621, "total_fragments": 633, 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"gc_content": 68.113, "coding_genes": 4691.193, "rRNA16S_genes": 2.166, "tRNA_genes": 53.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.411, "range_salinity": null, "facultative_respiration": 0.117, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.882, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.882, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.058, "vibrio_cell_shape": 0.058, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__Lysobacter", "s__Lysobacter sp004322525" ], "_genome_taxon": [ "Lysobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__Lysobacter", "s__Lysobacter sp004322525", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Xanthomonadales", "Xanthomonadaceae", "Lysobacter", "Lysobacter", "sp004322525" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }