{
    "type": "genome",
    "identifier": "GCA_004322545.1",
    "organism": "Rugosibacter sp.",
    "title": "Rugosibacter sp.",
    "description": "unverified source organism; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004322545.1",
        "bioproject": "PRJNA514088",
        "biosample": "SAMN10720227",
        "wgs_master": "SCUV00000000.1",
        "refseq_category": "na",
        "taxid": "1914450",
        "species_taxid": "1914450",
        "organism_name": "Rugosibacter sp.",
        "infraspecific_name": "",
        "isolate": "GW715_bin.19",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/01",
        "asm_name": "ASM432254v1",
        "submitter": "University of Oklahoma",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/322/545/GCA_004322545.1_ASM432254v1",
        "excluded_from_refseq": "unverified source organism; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-01",
    "dateModified": "2019-03-01",
    "datePublished": "2019-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rugosibacter sp."
        ],
        "sample_taxid": [
            "1914450"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Tennessee"
        ],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2665396",
        "Number of Sequences": "151",
        "Longest Sequences (bp)": "137154",
        "N50 (bp)": "36883",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.0",
        "Number of CDSs": "2493",
        "Average Protein Length": "301.6",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rugosibacter aromaticivorans",
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                "taxid": 1565605,
                "species_taxid": 1565605,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 776,
                "total_fragments": 810,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Denitratisoma oestradiolicum",
                "strain": "strain=DSM 16959",
                "accession": "GCA_007844305.1",
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                "species_taxid": 311182,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 810,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Denitratisoma oestradiolicum",
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                "accession": "GCA_902813185.1",
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                "species_taxid": 311182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3141,
                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera chlorobenzoica",
                "strain": "strain=3CB-1",
                "accession": "GCA_900108255.1",
                "taxid": 96773,
                "species_taxid": 96773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0788,
                "matched_fragments": 51,
                "total_fragments": 810,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera chlorobenzoica",
                "strain": "strain=3CB1",
                "accession": "GCA_001922305.1",
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                "species_taxid": 96773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0203,
                "matched_fragments": 53,
                "total_fragments": 810,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methyloversatilis discipulorum",
                "strain": "strain=FAM1",
                "accession": "GCA_000527135.1",
                "taxid": 1119528,
                "species_taxid": 1119528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9019,
                "matched_fragments": 55,
                "total_fragments": 810,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000934545.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rugosibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rugosibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002424865.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rugosibacter",
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                "mean_intra_species_ani": "99.77",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002422995.1",
                "gtdb_species": "s__Rugosibacter sp002422995",
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                "matched_fragments": 182,
                "total_fragments": 810,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rugosibacter",
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            },
            {
                "accession": "GCA_016235025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rugosibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000828635.1",
                "gtdb_species": "s__Sulfuritalea hydrogenivorans",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_903848955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Sulfuritalea",
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            {
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            {
                "accession": "GCA_016702335.1",
                "gtdb_species": "s__JADJEF01 sp016702335",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__JADJEF01",
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                "mean_intra_species_ani": "99.13",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
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    "_genome_taxon": [
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        "p__Pseudomonadota",
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        "g__Rugosibacter",
        "s__Rugosibacter aromaticivorans",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
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        "Rhodocyclaceae",
        "Rugosibacter",
        "Rugosibacter",
        "aromaticivorans"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}