{ "type": "genome", "identifier": "GCA_004322585.1", "organism": "Reyranella sp.", "title": "Reyranella sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Oklahoma", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004322585.1", "bioproject": "PRJNA514088", "biosample": "SAMN10720194", "wgs_master": "SCTO00000000.1", "refseq_category": "na", "taxid": "1929291", "species_taxid": "1929291", "organism_name": "Reyranella sp.", "infraspecific_name": "", "isolate": "FW301-02_bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/01", "asm_name": "ASM432258v1", "submitter": "University of Oklahoma", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/322/585/GCA_004322585.1_ASM432258v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-01", "dateModified": "2019-03-01", "datePublished": "2019-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Reyranella sp." ], "sample_taxid": [ "1929291" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Tennessee" ], "sample_host_location_id": [], "data_size": "1.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.12, "contamination": 4.69, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5548899", "Number of Sequences": "1574", "Longest Sequences (bp)": "18885", "N50 (bp)": "4116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "4057", "Average Protein Length": "277.8", "Coding Ratio (%)": "60.9", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 86.9609, "matched_fragments": 770, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella massiliensis", "strain": "strain=521", "accession": "GCA_000312425.1", "taxid": 445220, "species_taxid": 445220, "relation_to_type": "type", "validated": true, "ani": 83.0291, "matched_fragments": 632, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella soli", "strain": "strain=NBRC 108950", "accession": "GCA_007992495.1", "taxid": 1230389, "species_taxid": 1230389, "relation_to_type": "type", "validated": true, "ani": 82.271, "matched_fragments": 675, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 78.362, "matched_fragments": 424, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.589, "matched_fragments": 260, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.5798, "matched_fragments": 221, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.3891, "matched_fragments": 124, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 76.3777, "matched_fragments": 200, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 76.3707, "matched_fragments": 106, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum moscoviense", "strain": "strain=BB-1", "accession": "GCA_001650635.1", "taxid": 1437059, "species_taxid": 1437059, "relation_to_type": "type", "validated": true, "ani": 76.2097, "matched_fragments": 126, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 76.0364, "matched_fragments": 143, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 75.9783, "matched_fragments": 91, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.12, "contamination": 4.69, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_004297265.1", "gtdb_species": "s__Reyranella sp004297265", "ani": 99.7259, "matched_fragments": 907, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_009772935.1", "gtdb_species": "s__Reyranella sp009772935", "ani": 89.644, "matched_fragments": 822, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002281855.1", "gtdb_species": "s__Reyranella sp002281855", "ani": 88.5118, "matched_fragments": 803, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017990895.1", "gtdb_species": "s__Reyranella sp017990895", "ani": 88.4164, "matched_fragments": 653, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019039055.1", "gtdb_species": "s__Reyranella sp019039055", "ani": 87.2865, "matched_fragments": 750, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001557035.1", "gtdb_species": "s__Reyranella sp001557035", "ani": 87.0251, "matched_fragments": 718, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.812, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 30.0, "optimum_ph": 6.5, "genome_size": 5771094.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Reyranellales", "f__Reyranellaceae", "g__Reyranella", "s__Reyranella sp004297265" ], "_genome_taxon": [ "Reyranella", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Reyranellales", "f__Reyranellaceae", "g__Reyranella", "s__Reyranella sp004297265", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Reyranellales", "Reyranellaceae", "Reyranella", "Reyranella", "sp004297265" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }