{
    "type": "genome",
    "identifier": "GCA_004356135.1",
    "organism": "Caldithrix sp.",
    "title": "Caldithrix sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Scripps Institution of Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004356135.1",
        "bioproject": "PRJNA526329",
        "biosample": "SAMN11097070",
        "wgs_master": "SMXD00000000.1",
        "refseq_category": "na",
        "taxid": "1962856",
        "species_taxid": "1962856",
        "organism_name": "Caldithrix sp.",
        "infraspecific_name": "",
        "isolate": "N074bin33",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/19",
        "asm_name": "ASM435613v1",
        "submitter": "Scripps Institution of Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/356/135/GCA_004356135.1_ASM435613v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-19",
    "dateModified": "2019-03-19",
    "datePublished": "2019-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caldithrix sp."
        ],
        "sample_taxid": [
            "1962856"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3324124",
        "Number of Sequences": "329",
        "Longest Sequences (bp)": "51381",
        "N50 (bp)": "10731",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "2595",
        "Average Protein Length": "330.2",
        "Coding Ratio (%)": "77.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004356825.1",
                "gtdb_species": "s__N075bin58 sp004356825",
                "ani": 98.6966,
                "matched_fragments": 743,
                "total_fragments": 939,
                "gtdb_taxonomy": "d__Bacteria;p__KSB1;c__UBA2214;o__CR04bin15;f__CR04bin15;g__N075bin58",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.602,
        "doubling_h": null,
        "growth_tmp": 57.5,
        "optimum_tmp": 60.0,
        "optimum_ph": 6.95,
        "genome_size": 4978540.75,
        "gc_content": 45.1,
        "coding_genes": 3962.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__KSB1",
        "c__UBA2214",
        "o__CR04bin15",
        "f__N075bin58",
        "g__N075bin58",
        "s__N075bin58 sp004356825"
    ],
    "_genome_taxon": [
        "Caldithrix",
        "sp.",
        "d__Bacteria",
        "p__KSB1",
        "c__UBA2214",
        "o__CR04bin15",
        "f__N075bin58",
        "g__N075bin58",
        "s__N075bin58 sp004356825",
        "Bacteria",
        "KSB1",
        "UBA2214",
        "CR04bin15",
        "N075bin58",
        "N075bin58",
        "N075bin58",
        "sp004356825"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001378",
            "label": "deep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}