{
    "type": "genome",
    "identifier": "GCA_004356255.1",
    "organism": "Bacteroidota bacterium",
    "title": "Bacteroidota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Scripps Institution of Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004356255.1",
        "bioproject": "PRJNA526329",
        "biosample": "SAMN11097079",
        "wgs_master": "SMXM00000000.1",
        "refseq_category": "na",
        "taxid": "1898104",
        "species_taxid": "1898104",
        "organism_name": "Bacteroidota bacterium",
        "infraspecific_name": "",
        "isolate": "N074bin44",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/19",
        "asm_name": "ASM435625v1",
        "submitter": "Scripps Institution of Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/356/255/GCA_004356255.1_ASM435625v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-19",
    "dateModified": "2019-03-19",
    "datePublished": "2019-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidota bacterium"
        ],
        "sample_taxid": [
            "1898104"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.571 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 1.42,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1991432",
        "Number of Sequences": "209",
        "Longest Sequences (bp)": "44705",
        "N50 (bp)": "9806",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.8",
        "Number of CDSs": "1605",
        "Average Protein Length": "329.8",
        "Coding Ratio (%)": "79.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pukyongia salina",
                "strain": "strain=RR4-38",
                "accession": "GCA_002966125.1",
                "taxid": 2094025,
                "species_taxid": 2094025,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 65,
                "total_fragments": 552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ulvibacter litoralis",
                "strain": "strain=DSM 16195",
                "accession": "GCA_900102055.1",
                "taxid": 227084,
                "species_taxid": 227084,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6456,
                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita capsosiphonis",
                "strain": "strain=DSM 23843",
                "accession": "GCA_000429125.1",
                "taxid": 487317,
                "species_taxid": 487317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5874,
                "matched_fragments": 50,
                "total_fragments": 552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ulvibacter antarcticus",
                "strain": "strain=DSM 23424",
                "accession": "GCA_003688405.1",
                "taxid": 442714,
                "species_taxid": 442714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5687,
                "matched_fragments": 60,
                "total_fragments": 552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ulvibacter litoralis",
                "strain": "strain=KCTC 12104",
                "accession": "GCA_014651275.1",
                "taxid": 227084,
                "species_taxid": 227084,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4569,
                "matched_fragments": 64,
                "total_fragments": 552,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 1.42,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004356305.1",
                "gtdb_species": "s__SMXJ01 sp004356305",
                "ani": 98.7671,
                "matched_fragments": 370,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SMXJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.69",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013043825.1",
                "gtdb_species": "s__SMXJ01 sp013043825",
                "ani": 77.1414,
                "matched_fragments": 97,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SMXJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009827225.1",
                "gtdb_species": "s__SMXJ01 sp009827225",
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                "matched_fragments": 97,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__SMXJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003333325.1",
                "gtdb_species": "s__Ulvibacter_A alkanivorans",
                "ani": 77.0462,
                "matched_fragments": 58,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ulvibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002813135.1",
                "gtdb_species": "s__Altibacter sp002813135",
                "ani": 76.7296,
                "matched_fragments": 80,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002631855.1",
                "gtdb_species": "s__Marixanthomonas sp002631855",
                "ani": 76.5568,
                "matched_fragments": 60,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marixanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002337605.1",
                "gtdb_species": "s__Marinirhabdus sp002337605",
                "ani": 76.5455,
                "matched_fragments": 64,
                "total_fragments": 552,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marinirhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__Aureisphaera",
        "s__Aureisphaera sp004356305"
    ],
    "_genome_taxon": [
        "Bacteroidota",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__Aureisphaera",
        "s__Aureisphaera sp004356305",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Flavobacteriales",
        "Flavobacteriaceae",
        "Aureisphaera",
        "Aureisphaera",
        "sp004356305"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001378",
            "label": "deep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}