{
    "type": "genome",
    "identifier": "GCA_004357335.1",
    "organism": "Nitrospina sp.",
    "title": "Nitrospina sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Scripps Institution of Oceanography",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004357335.1",
        "bioproject": "PRJNA526329",
        "biosample": "SAMN11097035",
        "wgs_master": "SMVU00000000.1",
        "refseq_category": "na",
        "taxid": "2024844",
        "species_taxid": "2024844",
        "organism_name": "Nitrospina sp.",
        "infraspecific_name": "",
        "isolate": "CR04bin26",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/19",
        "asm_name": "ASM435733v1",
        "submitter": "Scripps Institution of Oceanography",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/357/335/GCA_004357335.1_ASM435733v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-19",
    "dateModified": "2019-03-19",
    "datePublished": "2019-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospina sp."
        ],
        "sample_taxid": [
            "2024844"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.525 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 63.43,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1841422",
        "Number of Sequences": "126",
        "Longest Sequences (bp)": "55117",
        "N50 (bp)": "19195",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.0",
        "Number of CDSs": "1679",
        "Average Protein Length": "298.5",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospina gracilis",
                "strain": "strain=3/211",
                "accession": "GCA_000341545.2",
                "taxid": 35801,
                "species_taxid": 35801,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0447,
                "matched_fragments": 132,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 63.43,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004357365.1",
                "gtdb_species": "s__SZUA-226 sp004357365",
                "ani": 99.1396,
                "matched_fragments": 387,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__SZUA-226",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003229345.1",
                "gtdb_species": "s__SZUA-226 sp003229345",
                "ani": 80.2664,
                "matched_fragments": 235,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__SZUA-226",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004357435.1",
                "gtdb_species": "s__SMVS01 sp004357435",
                "ani": 77.4982,
                "matched_fragments": 77,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__SMVS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000341545.2",
                "gtdb_species": "s__Nitrospina gracilis",
                "ani": 77.0247,
                "matched_fragments": 133,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Nitrospina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003246675.1",
                "gtdb_species": "s__SZUA-259 sp003246675",
                "ani": 76.5575,
                "matched_fragments": 78,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__SZUA-259",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003235465.1",
                "gtdb_species": "s__SZUA-259 sp003235465",
                "ani": 76.2876,
                "matched_fragments": 63,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__SZUA-259",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016217765.1",
                "gtdb_species": "s__JACRGP01 sp016217765",
                "ani": 76.2459,
                "matched_fragments": 53,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__JACRGP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016207065.1",
                "gtdb_species": "s__JACRGP01 sp016207065",
                "ani": 76.0964,
                "matched_fragments": 55,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__JACRGP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__Nitrospinaceae",
        "g__SZUA-226",
        "s__SZUA-226 sp004357365"
    ],
    "_genome_taxon": [
        "Nitrospina",
        "sp.",
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__Nitrospinaceae",
        "g__SZUA-226",
        "s__SZUA-226 sp004357365",
        "Bacteria",
        "Nitrospinota",
        "Nitrospinia",
        "Nitrospinales",
        "Nitrospinaceae",
        "SZUA-226",
        "SZUA-226",
        "sp004357365"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001378",
            "label": "deep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}