{
    "type": "genome",
    "identifier": "GCA_004366985.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Marine Biological Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004366985.1",
        "bioproject": "PRJNA264811",
        "biosample": "SAMN10863482",
        "wgs_master": "SESV00000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "JdFRolivine-3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/22",
        "asm_name": "ASM436698v1",
        "submitter": "Marine Biological Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/366/985/GCA_004366985.1_ASM436698v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-22",
    "dateModified": "2019-03-22",
    "datePublished": "2019-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Hole 1301A, eastern flank of the Juan de Fuca Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "0.480 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1728940",
        "Number of Sequences": "148",
        "Longest Sequences (bp)": "68845",
        "N50 (bp)": "19917",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "1537",
        "Average Protein Length": "307.5",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002375935.1",
                "gtdb_species": "s__UBA3574 sp002375935",
                "ani": 99.962,
                "matched_fragments": 439,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__UBA3574",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015661965.1",
                "gtdb_species": "s__UBA3574 sp015661965",
                "ani": 81.5553,
                "matched_fragments": 186,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__UBA3574",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001508155.1",
                "gtdb_species": "s__64-32 sp001508155",
                "ani": 79.5156,
                "matched_fragments": 212,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__64-32",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.06",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002011415.1",
                "gtdb_species": "s__JdFR-47 sp002011415",
                "ani": 78.9455,
                "matched_fragments": 170,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__JdFR-47",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014361055.1",
                "gtdb_species": "s__JACIWI01 sp014361055",
                "ani": 77.763,
                "matched_fragments": 130,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__JACIWI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900465355.1",
                "gtdb_species": "s__Bipolaricaulis anaerobius",
                "ani": 76.8432,
                "matched_fragments": 75,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Bipolaricaulota;c__Bipolaricaulia;o__Bipolaricaulales;f__Bipolaricaulaceae;g__Bipolaricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bipolaricaulota",
        "c__Bipolaricaulia",
        "o__Bipolaricaulales",
        "f__Bipolaricaulaceae",
        "g__UBA3574",
        "s__UBA3574 sp002375935"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Bacteria",
        "p__Bipolaricaulota",
        "c__Bipolaricaulia",
        "o__Bipolaricaulales",
        "f__Bipolaricaulaceae",
        "g__UBA3574",
        "s__UBA3574 sp002375935",
        "Bacteria",
        "Bipolaricaulota",
        "Bipolaricaulia",
        "Bipolaricaulales",
        "Bipolaricaulaceae",
        "UBA3574",
        "UBA3574",
        "sp002375935"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}