{ "type": "genome", "identifier": "GCA_004525075.1", "organism": "Flavobacteriales bacterium", "title": "Flavobacteriales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Radboud University Njmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004525075.1", "bioproject": "PRJNA511814", "biosample": "SAMN11127089", "wgs_master": "SPCQ00000000.1", "refseq_category": "na", "taxid": "2021391", "species_taxid": "2021391", "organism_name": "Flavobacteriales bacterium", "infraspecific_name": "", "isolate": "das_tool.metabat2.33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/30", "asm_name": "ASM452507v1", "submitter": "Radboud University Njmegen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/525/075/GCA_004525075.1_ASM452507v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-30", "dateModified": "2019-03-30", "datePublished": "2019-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriales bacterium" ], "sample_taxid": [ "2021391" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Bothnian Sea" ], "sample_host_location_id": [], "data_size": "0.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.85, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2580023", "Number of Sequences": "647", "Longest Sequences (bp)": "15503", "N50 (bp)": "4317", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.4", "Number of CDSs": "1746", "Average Protein Length": "299.7", "Coding Ratio (%)": "60.8", "Number of rRNAs": "1", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, "relation_to_type": "type", "validated": true, "ani": 76.7464, "matched_fragments": 75, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=KCTC 22021", "accession": "GCA_014673435.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 76.2755, "matched_fragments": 55, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacterium marinum", "strain": "strain=CCMM003", "accession": "GCA_003626755.1", "taxid": 2419782, "species_taxid": 2419782, "relation_to_type": "type", "validated": true, "ani": 76.2382, "matched_fragments": 61, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=DSM 23514", "accession": "GCA_003148665.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 76.2299, "matched_fragments": 55, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatimonas sangjinii", "strain": "strain=F202Z8", "accession": "GCA_005943945.1", "taxid": 2583587, "species_taxid": 2583587, "relation_to_type": "type", "validated": true, "ani": 76.189, "matched_fragments": 63, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pricia antarctica", "strain": "strain=DSM 23421", "accession": "GCA_900101815.1", "taxid": 641691, "species_taxid": 641691, "relation_to_type": "type", "validated": true, "ani": 75.749, "matched_fragments": 57, "total_fragments": 511, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.85, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009371985.2", "gtdb_species": "s__TP-CH-4 sp009371985", "ani": 76.7464, "matched_fragments": 75, "total_fragments": 511, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__TP-CH-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003426735.1", "gtdb_species": "s__Arenibacter sp003426735", "ani": 76.7349, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ulvibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003148665.1", "gtdb_species": "s__Maribacter_A polysiphoniae", "ani": 76.2299, "matched_fragments": 55, "total_fragments": 511, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900101815.1", "gtdb_species": "s__Pricia antarctica", "ani": 75.749, "matched_fragments": 57, "total_fragments": 511, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pricia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.337, "cell_length": 0.308, "doubling_h": 1.285, "growth_tmp": 26.455, "optimum_tmp": 26.685, "optimum_ph": 7.271, "genome_size": 3861663.667, "gc_content": 35.517, "coding_genes": 2961.142, "rRNA16S_genes": 3.684, "tRNA_genes": 48.763, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.372, "range_salinity": 0.615, "facultative_respiration": 0.042, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.945, "mesophilic_range_tmp": 0.898, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.101, "bacillus_cell_shape": 0.982, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.002, "coccobacillus_cell_shape": 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