{
    "type": "genome",
    "identifier": "GCA_004525115.1",
    "organism": "Gemmatimonadales bacterium",
    "title": "Gemmatimonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University Njmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004525115.1",
        "bioproject": "PRJNA511814",
        "biosample": "SAMN11127100",
        "wgs_master": "SPDB00000000.1",
        "refseq_category": "na",
        "taxid": "2448054",
        "species_taxid": "2448054",
        "organism_name": "Gemmatimonadales bacterium",
        "infraspecific_name": "",
        "isolate": "das_tool.metabat2.77",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/30",
        "asm_name": "ASM452511v1",
        "submitter": "Radboud University Njmegen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/525/115/GCA_004525115.1_ASM452511v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-30",
    "dateModified": "2019-03-30",
    "datePublished": "2019-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadales bacterium"
        ],
        "sample_taxid": [
            "2448054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Bothnian Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.511 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 55.68,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1804020",
        "Number of Sequences": "310",
        "Longest Sequences (bp)": "27283",
        "N50 (bp)": "7219",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "1467",
        "Average Protein Length": "299.3",
        "Coding Ratio (%)": "73.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 55.68,
            "contamination": 0.52,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013003805.1",
                "gtdb_species": "s__JABDII01 sp013003805",
                "ani": 77.7919,
                "matched_fragments": 143,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JABDII01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713435.1",
                "gtdb_species": "s__JADJOM01 sp016713435",
                "ani": 76.2065,
                "matched_fragments": 60,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016713785.1",
                "gtdb_species": "s__JADJOM01 sp016713785",
                "ani": 76.1719,
                "matched_fragments": 57,
                "total_fragments": 432,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 5607935.711,
        "gc_content": 67.113,
        "coding_genes": 4635.5,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__JABDII01",
        "s__"
    ],
    "_genome_taxon": [
        "Gemmatimonadales",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__JABDII01",
        "s__",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "GWC2-71-9",
        "JABDII01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        },
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}