# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_51	LOCUS_00510	sequence001:51169..52497(+)	partial			WP_003547883.1	signal recognition particle-docking protein FtsY	70.8	72.6	88.5
MGA_173	LOCUS_01720	sequence004:1..913(+)	partial			WP_003546793.1	penicillin-binding protein	100.0	42.1	82.8
MGA_181	LOCUS_01800	sequence004:8502..8804(+)	partial			WP_003221463.1	YggT family protein	74.0	77.8	39.5
MGA_183	LOCUS_01820	sequence004:9580..10062(+)	frameshift		10029	WP_011254259.1	DivIVA domain-containing protein	98.1	58.8	71.3
MGA_184	LOCUS_01830	sequence004:10049..10444(+)	frameshift		10029	WP_011254259.1	DivIVA domain-containing protein	100.0	44.9	51.5
MGA_224	LOCUS_02210	sequence005:220..672(+)	partial			WP_011254232.1	alpha/beta hydrolase	100.0	47.6	83.3
MGA_295	LOCUS_02910	sequence006:20177..20695(-)	partial			WP_011254091.1	hypothetical protein	82.0	55.1	83.7
MGA_297	LOCUS_02930	sequence006:20822..21331(-)	partial			WP_003548923.1	helix-turn-helix transcriptional regulator	98.8	52.6	70.4
MGA_311	LOCUS_03070	sequence006:35972..36334(-)	partial			WP_003548967.1	hypothetical protein	73.3	83.8	73.9
MGA_315	LOCUS_03100	sequence007:3136..3744(-)	internal_stop_codon	3136..3138(-)		WP_011254372.1	hypothetical protein	100.0	80.8	64.9
MGA_318	LOCUS_03130	sequence007:4710..5606(-)	frameshift		5659	WP_003640299.1	replication-associated recombination protein A	99.7	69.5	56.7
MGA_319	LOCUS_03140	sequence007:5573..5842(-)	frameshift		5659	WP_003640299.1	replication-associated recombination protein A	52.8	10.5	72.3
MGA_339	LOCUS_03340	sequence007:23815..24663(-)	frameshift		24724	WP_003642253.1	Nramp family divalent metal transporter	93.3	50.8	59.5
MGA_340	LOCUS_03350	sequence007:24653..25285(-)	frameshift,internal_stop_codon	25242..25244(-)	25211,24727	WP_002326755.1	Nramp family divalent metal transporter	76.7	30.5	63.4
MGA_349	LOCUS_03440	sequence007:32527..32829(+)	frameshift,internal_stop_codon	32462..32464(+)	32338	WP_003547715.1	M23 family metallopeptidase	99.0	49.3	85.7
MGA_352	LOCUS_03470	sequence008:49..1032(-)	partial			WP_015613355.1	PTS transporter subunit EIIC	96.6	74.9	78.5
MGA_400	LOCUS_03950	sequence009:12685..12963(-)	frameshift		12946	WP_003549111.1	DNA polymerase III subunit gamma/tau	93.5	14.3	83.7
MGA_401	LOCUS_03960	sequence009:12941..14437(-)	frameshift		12946	WP_003549111.1	DNA polymerase III subunit gamma/tau	99.8	82.6	80.9
MGA_416	LOCUS_04110	sequence009:25501..25722(-)	frameshift		25711	WP_011254133.1	RNA-guided endonuclease TnpB family protein	98.6	18.7	80.6
MGA_417	LOCUS_04120	sequence009:25688..26260(-)	frameshift		25710,26382	WP_011254472.1	RNA-guided endonuclease TnpB family protein	99.5	49.1	83.6
MGA_418	LOCUS_04130	sequence009:26257..26658(-)	frameshift		26382	WP_011254472.1	RNA-guided endonuclease TnpB family protein	69.2	23.9	93.5
MGA_425	LOCUS_04200	sequence010:1..744(+)	partial			WP_003549665.1	M1 family metallopeptidase	99.2	29.0	91.0
MGA_427	LOCUS_04220	sequence010:2689..2961(+)	frameshift		2672,2449,2931	WP_015613384.1	membrane protein	90.0	43.6	38.3
MGA_458	LOCUS_04530	sequence010:30315..30869(+)	frameshift		30821	WP_003549723.1	amino acid racemase	94.0	69.5	97.7
MGA_459	LOCUS_04540	sequence010:30839..31072(+)	frameshift		30821	WP_003549723.1	amino acid racemase	100.0	30.9	93.5
MGA_487	LOCUS_04820	sequence011:30962..31330(+)	frameshift		31312	WP_011254394.1	GNAT family N-acetyltransferase	100.0	82.4	72.1
MGA_504	LOCUS_04990	sequence012:15694..16302(+)	frameshift,internal_stop_codon	15665..15667(+)	15562	WP_003547045.1	aldo/keto reductase	96.5	72.0	78.5
MGA_518	LOCUS_05130	sequence012:29868..30311(+)	partial			WP_003547069.1	DNA polymerase III subunit alpha	59.2	8.4	86.2
MGA_522	LOCUS_05160	sequence013:1111..1317(+)	frameshift		1314	WP_011254161.1	maltose O-acetyltransferase	67.6	30.7	69.6
MGA_523	LOCUS_05170	sequence013:1314..1598(+)	frameshift		1314	WP_011254161.1	maltose O-acetyltransferase	98.9	64.0	71.9
MGA_538	LOCUS_05320	sequence013:20284..20577(+)	partial			WP_000656771.1	TetR/AcrR family transcriptional regulator	94.8	47.8	40.4
MGA_543	LOCUS_05370	sequence013:24257..25066(+)	partial			WP_000455809.1	hypothetical protein	91.1	70.7	27.0
MGA_550	LOCUS_05430	sequence014:16..423(+)	partial			WP_003546248.1	hypothetical protein	100.0	36.4	78.5
MGA_577	LOCUS_05680	sequence015:107..280(-)	internal_stop_codon	326..328(-)		WP_003548719.1	ABC transporter substrate-binding protein/permease	100.0	11.6	94.7
MGA_578	LOCUS_05690	sequence015:326..1441(-)	frameshift,internal_stop_codon	325..327(-)	1527	WP_003548719.1	ABC transporter substrate-binding protein/permease	100.0	75.6	91.9
MGA_582	LOCUS_05730	sequence015:4473..5324(-)	partial			WP_048065307.1	helix-turn-helix domain-containing protein	92.9	61.4	28.7
MGA_583	LOCUS_05740	sequence015:5275..5562(-)	frameshift		5439	WP_003548706.1	ATP-binding protein	47.4	48.9	77.8
MGA_593	LOCUS_05840	sequence015:13863..14240(+)	internal_stop_codon	13818..13820(+)		WP_004039686.1	methylated-DNA--[protein]-cysteine S-methyltransferase	96.8	70.3	64.5
MGA_603	LOCUS_05940	sequence015:22986..23885(-)	frameshift		23989	WP_003548666.1	glycosyl hydrolase family 8	100.0	79.9	67.6
MGA_604	LOCUS_05950	sequence015:24128..24703(-)	frameshift		24705	WP_002267735.1	glycosyltransferase	99.5	43.6	65.3
MGA_605	LOCUS_05960	sequence015:24685..25431(-)	frameshift		24705	WP_002267735.1	glycosyltransferase	96.4	54.8	65.7
MGA_606	LOCUS_05970	sequence015:25557..25793(-)	frameshift		25819	WP_011254037.1	hypothetical protein	100.0	27.3	55.1
MGA_607	LOCUS_05980	sequence015:25790..26095(-)	frameshift,internal_stop_codon	26105..26107(-)	25819	WP_011254037.1	hypothetical protein	91.1	32.2	59.8
MGA_608	LOCUS_05990	sequence015:26105..26410(-)	internal_stop_codon	26105..26107(-)		WP_011254037.1	hypothetical protein	100.0	35.3	64.4
MGA_645	LOCUS_06350	sequence016:29204..>29833(-)	partial			WP_003546505.1	lactonase family protein	100.0	61.1	89.0
MGA_677	LOCUS_06670	sequence018:9276..9749(+)	frameshift		9689	WP_003548860.1	ABC transporter ATP-binding protein	87.9	39.2	96.4
MGA_678	LOCUS_06680	sequence018:9746..10324(+)	frameshift		9689	WP_003548860.1	ABC transporter ATP-binding protein	100.0	54.5	95.3
MGA_697	LOCUS_06860	sequence019:273..506(-)	frameshift		362	WP_003546379.1	nucleoside hydrolase	63.6	15.9	95.9
MGA_703	LOCUS_06920	sequence019:5189..5590(-)	frameshift		5591	WP_003546370.1	DUF2974 domain-containing protein	100.0	43.5	85.7
MGA_704	LOCUS_06930	sequence019:5583..6101(-)	frameshift		5591	WP_003546370.1	DUF2974 domain-containing protein	98.3	55.2	85.2
MGA_723	LOCUS_07120	sequence019:24376..24567(+)	frameshift		24318	WP_025015513.1	Cof-type HAD-IIB family hydrolase	90.5	21.7	89.5
MGA_727	LOCUS_07160	sequence020:160..687(-)	partial			WP_011254493.1	hypothetical protein	17.7	18.1	74.2
MGA_780	LOCUS_07660	sequence022:8238..8972(+)	partial			WP_011475526.1	DUF4097 domain-containing protein	78.3	57.3	28.8
MGA_783	LOCUS_07690	sequence022:11301..12161(-)	partial			WP_003546414.1	CPBP family intramembrane metalloprotease	84.6	58.4	36.8
MGA_802	LOCUS_07880	sequence023:8864..9043(+)	frameshift		9013	WP_011254390.1	citrate lyase holo-[acyl-carrier protein] synthase	94.9	31.1	69.6
MGA_803	LOCUS_07890	sequence023:9081..9401(+)	frameshift		9013	WP_011254390.1	citrate lyase holo-[acyl-carrier protein] synthase	99.1	58.3	66.7
MGA_814	LOCUS_08000	sequence023:17515..18750(+)	frameshift		18732	WP_003546304.1	heavy metal translocating P-type ATPase	99.0	64.5	69.6
MGA_815	LOCUS_08010	sequence023:18891..19355(+)	frameshift,internal_stop_codon	19357..19359(+),19354..19356(+)	18735	WP_003546304.1	heavy metal translocating P-type ATPase	98.7	24.0	74.3
MGA_819	LOCUS_08050	sequence023:20904..21344(-)	frameshift		21577,21469	WP_003547730.1	aspartate kinase	89.7	28.9	96.2
MGA_820	LOCUS_08060	sequence023:21563..21796(-)	frameshift		21577,21469	WP_003547730.1	aspartate kinase	94.8	16.1	82.2
MGA_864	LOCUS_08480	sequence025:20820..21035(-)	frameshift		20882	WP_011254532.1	surface protein	70.4	7.6	76.9
MGA_865	LOCUS_08490	sequence025:21369..>22490(-)	internal_stop_codon	21369..21371(-)		WP_011254532.1	surface protein	100.0	57.1	90.6
MGA_910	LOCUS_08930	sequence028:4170..4481(-)	frameshift		4205	WP_003549192.1	Holliday junction resolvase RuvX	89.3	64.8	94.6
MGA_924	LOCUS_09070	sequence029:97..432(+)	partial			WP_003547471.1	hypothetical protein	99.1	56.6	39.1
MGA_931	LOCUS_09140	sequence029:6417..6878(-)	internal_stop_codon	7017..7019(-)		WP_172824466.1	alpha/beta hydrolase	100.0	52.7	54.9
MGA_933	LOCUS_09160	sequence029:8891..9277(-)	partial			WP_011674825.1	SDR family oxidoreductase	95.3	53.9	54.9
MGA_934	LOCUS_09170	sequence029:9216..9449(-)	partial			WP_011674825.1	SDR family oxidoreductase	85.7	31.3	55.9
MGA_935	LOCUS_09180	sequence029:9636..10220(-)	partial			WP_004046647.1	zinc-dependent alcohol dehydrogenase family protein	100.0	56.1	88.7
MGA_936	LOCUS_09190	sequence029:10505..10732(-)	partial			WP_011254338.1	RNA 2'-phosphotransferase	48.0	69.2	86.1
MGA_943	LOCUS_09260	sequence029:20775..>21308(-)	partial			WP_011101592.1	DHA2 family efflux MFS transporter permease subunit	92.7	35.3	38.4
MGA_949	LOCUS_09310	sequence030:4046..4849(+)	partial			WP_011109439.1	NAD+--arginine ADP-ribosyltransferase EFV	98.1	55.0	23.5
MGA_994	LOCUS_09760	sequence032:5204..5731(+)	partial			WP_000679939.1	LPXTG-anchored beta-N-acetylhexosaminidase StrH	96.6	14.9	31.5
MGA_995	LOCUS_09770	sequence032:5963..7315(+)	internal_stop_codon	7313..7315(+),5897..5899(+)		WP_003549857.1	BspA family leucine-rich repeat surface protein	99.6	32.0	35.2
MGA_1004	LOCUS_09860	sequence032:16430..17590(+)	partial			WP_011254604.1	RNA-guided endonuclease TnpB family protein	57.5	74.7	77.5
MGA_1007	LOCUS_09890	sequence033:2171..3178(-)	frameshift		3186	WP_011254083.1	PTS sugar transporter subunit IIC	97.6	73.9	74.0
MGA_1008	LOCUS_09900	sequence033:3184..3510(-)	frameshift		3189	WP_011254083.1	PTS sugar transporter subunit IIC	100.0	24.5	69.4
MGA_1011	LOCUS_09930	sequence033:5842..6324(-)	partial			WP_014878004.1	ACP S-malonyltransferase	77.5	44.9	33.6
MGA_1039	LOCUS_10210	sequence034:13220..13585(+)	frameshift		13618,13582	WP_003546647.1	PRD domain-containing protein	100.0	47.5	72.2
MGA_1040	LOCUS_10220	sequence034:13641..14030(+)	frameshift		13618,13582	WP_003546647.1	PRD domain-containing protein	80.6	37.1	85.6
MGA_1041	LOCUS_10230	sequence034:14061..14297(+)	partial			WP_011254231.1	beta-glucoside-specific PTS transporter subunit IIABC	92.3	10.9	90.3
MGA_1042	LOCUS_10240	sequence034:14320..14616(+)	frameshift		14276,14604	WP_011254231.1	beta-glucoside-specific PTS transporter subunit IIABC	96.9	14.3	94.7
MGA_1043	LOCUS_10250	sequence034:14613..15149(+)	frameshift		15105,14604	WP_011254231.1	beta-glucoside-specific PTS transporter subunit IIABC	93.8	25.2	83.2
MGA_1044	LOCUS_10260	sequence034:15136..15282(+)	frameshift		15104	WP_011254231.1	beta-glucoside-specific PTS transporter subunit IIABC	100.0	7.2	77.1
MGA_1046	LOCUS_10280	sequence034:16979..17410(+)	partial			WP_011254232.1	alpha/beta hydrolase	89.5	40.6	78.9
MGA_1064	LOCUS_10460	sequence035:16905..17177(-)	partial			WP_015613355.1	PTS transporter subunit EIIC	100.0	21.3	82.2
MGA_1074	LOCUS_10550	sequence036:10661..12115(-)	frameshift		12095	WP_011073938.1	type I restriction-modification system endonuclease	99.8	43.1	38.6
MGA_1075	LOCUS_10560	sequence036:12078..13874(-)	frameshift		12104	WP_011122926.1	type I restriction-modification system endonuclease	74.4	38.6	45.5
MGA_1089	LOCUS_10690	sequence037:8645..9250(+)	partial			WP_011254543.1	DUF4767 domain-containing protein	73.6	44.0	38.5
MGA_1093	LOCUS_10730	sequence037:12619..12951(+)	partial			WP_005693372.1	ATP-binding protein	88.2	24.0	51.5
MGA_1110	LOCUS_10880	sequence038:14633..14845(+)	partial			WP_003548390.1	M1 family metallopeptidase	94.3	13.1	83.3
MGA_1111	LOCUS_10890	sequence039:5..1084(-)	partial			WP_011254524.1	Rib/alpha-like domain-containing protein	60.7	10.2	35.3
MGA_1114	LOCUS_10920	sequence039:5393..6223(-)	partial			WP_011254525.1	MMPL family transporter	94.9	21.2	90.8
MGA_1134	LOCUS_11110	sequence041:26..337(-)	partial			WP_002296414.1	LacI family DNA-binding transcriptional regulator	93.2	28.2	35.1
MGA_1135	LOCUS_11120	sequence041:292..621(-)	partial			WP_005482344.1	transcriptional regulator EbgR	92.7	30.8	37.6
MGA_1145	LOCUS_11210	sequence042:250..471(-)	partial			WP_003562902.1	hypothetical protein	80.8	72.5	50.8
MGA_1158	LOCUS_11340	sequence043:19..402(-)	partial			WP_068990772.1	IS66-like element short variant transposase	89.8	24.9	64.9
MGA_1164	LOCUS_11400	sequence043:8380..8628(-)	partial			WP_012775512.1	replication initiator protein A	72.0	21.7	40.7
MGA_1168	LOCUS_11440	sequence043:10257..10478(-)	partial			WP_009930477.1	aldo/keto reductase	78.1	17.5	55.2
MGA_1172	LOCUS_11480	sequence043:12796..13407(+)	internal_stop_codon	12656..12658(+)		WP_011949006.1	YfcC family protein	91.1	36.2	51.4
MGA_1188	LOCUS_11630	sequence045:1422..2333(+)	partial			WP_014565478.1	SLAP domain-containing protein	85.1	71.6	43.3
MGA_1189	LOCUS_11640	sequence045:2465..2959(+)	partial			WP_014565478.1	SLAP domain-containing protein	81.7	32.9	41.0
MGA_1190	LOCUS_11650	sequence045:2998..3681(-)	partial			WP_201276079.1	IS256-like element ISEf1 family transposase	99.6	65.6	48.7
MGA_1191	LOCUS_11660	sequence045:3873..4433(+)	partial			WP_003644056.1	helix-turn-helix transcriptional regulator	56.5	41.6	36.2
MGA_1192	LOCUS_11670	sequence045:4430..4780(+)	partial			WP_003594613.1	NAD(P)H-dependent oxidoreductase	94.0	56.6	51.4
MGA_1195	LOCUS_11700	sequence045:7002..7397(-)	internal_stop_codon	7002..7004(-)		WP_034532906.1	kinase	99.2	79.8	65.4
MGA_1200	LOCUS_11750	sequence045:10173..11036(-)	partial			WP_135960404.1	MFS transporter	99.7	71.0	64.3
MGA_1220	LOCUS_11940	sequence047:393..848(-)	partial			WP_010922065.1	hypothetical protein	85.4	60.8	45.7
MGA_1236	LOCUS_12100	sequence047:7505..8905(+)	partial			WP_000233452.1	DEAD/DEAH box helicase family protein	100.0	58.1	29.1
MGA_1237	LOCUS_12110	sequence047:8985..9287(+)	partial			WP_002399578.1	DUF3850 domain-containing protein	88.0	37.5	43.2
MGA_1241	LOCUS_12150	sequence047:10179..10673(+)	partial			WP_001006993.1	NUMOD4 domain-containing protein	70.7	68.2	42.7
MGA_1250	LOCUS_12230	sequence048:8834..9271(+)	frameshift,internal_stop_codon	8822..8824(+)	9256	WP_011254286.1	DASS family sodium-coupled anion symporter	97.2	29.5	84.0
MGA_1251	LOCUS_12240	sequence048:9290..9484(+)	frameshift		9256	WP_011254286.1	DASS family sodium-coupled anion symporter	98.4	12.9	84.1
MGA_1253	LOCUS_12260	sequence048:10578..10826(+)	frameshift		10537	WP_003547009.1	[citrate (pro-3S)-lyase] ligase	100.0	23.4	80.5
MGA_1255	LOCUS_12280	sequence048:11057..11692(+)	internal_stop_codon	10973..10975(+)		WP_011254532.1	surface protein	53.6	18.2	32.8
MGA_1256	LOCUS_12290	sequence048:11914..12183(+)	partial			WP_003547019.1	DUF441 domain-containing protein	88.8	52.3	89.9
MGA_1287	LOCUS_12590	sequence050:11102..11701(-)	partial			WP_003548485.1	mucus-binding protein	75.9	22.9	61.9
MGA_1300	LOCUS_12710	sequence051:9505..10245(-)	frameshift		9519	WP_003549299.1	LPXTG cell wall anchor domain-containing protein	96.3	54.3	31.0
MGA_1344	LOCUS_13100	sequence055:184..861(-)	frameshift,internal_stop_codon	883..885(-)	255	WP_003546199.1	hypothetical protein	89.8	68.4	89.8
MGA_1345	LOCUS_13110	sequence055:883..1005(-)	internal_stop_codon	883..885(-)		WP_003546199.1	hypothetical protein	100.0	13.5	87.5
MGA_1346	LOCUS_13120	sequence055:1005..1220(-)	partial			WP_011254169.1	PTS sugar transporter subunit IIC	90.1	14.4	79.7
MGA_1349	LOCUS_13150	sequence055:3432..3677(-)	partial			WP_003546189.1	hypothetical protein	96.3	60.9	79.5
MGA_1358	LOCUS_13240	sequence056:1..566(+)	partial			WP_003546883.1	4-hydroxy-tetrahydrodipicolinate synthase	100.0	60.1	83.4
MGA_1364	LOCUS_13300	sequence056:6319..6531(-)	frameshift		6384	WP_003546396.1	ABC transporter ATP-binding protein	71.4	8.5	58.0
MGA_1365	LOCUS_13310	sequence056:6710..7114(-)	partial			WP_011861425.1	MarR family transcriptional regulator	93.3	57.6	46.4
MGA_1385	LOCUS_13480	sequence058:5888..6217(-)	frameshift		5926	WP_012775247.1	DUF3955 domain-containing protein	91.7	63.3	58.0
MGA_1388	LOCUS_13510	sequence058:8849..9136(+)	frameshift		9103	WP_003546330.1	TetR/AcrR family transcriptional regulator	95.8	53.5	75.8
MGA_1389	LOCUS_13520	sequence058:9133..9360(+)	frameshift		9103	WP_003546330.1	TetR/AcrR family transcriptional regulator	100.0	44.1	73.3
MGA_1393	LOCUS_13550	sequence059:2877..3320(+)	frameshift,internal_stop_codon	2825..2827(+),3354..3356(+),3318..3320(+)	2748	WP_003549250.1	amino acid permease	100.0	30.6	87.1
MGA_1418	LOCUS_13780	sequence062:331..588(-)	internal_stop_codon	331..333(-)		WP_002295354.1	LysR substrate-binding domain-containing protein	95.3	28.7	36.0
MGA_1434	LOCUS_13940	sequence063:7630..>8796(-)	partial			WP_011254096.1	APC family permease	99.0	72.5	86.5
MGA_1439	LOCUS_13980	sequence064:5058..5336(+)	frameshift,internal_stop_codon	5322..5324(+)	5273,5345	WP_003548046.1	M57 family metalloprotease	78.3	32.4	56.9
MGA_1466	LOCUS_14230	sequence066:4940..5368(-)	partial			WP_003548046.1	M57 family metalloprotease	97.9	53.2	30.8
MGA_1469	LOCUS_14260	sequence066:7280..7450(-)	partial			WP_011254315.1	alpha,alpha-phosphotrehalase	100.0	10.1	78.6
MGA_1470	LOCUS_14270	sequence066:7479..7880(-)	partial			WP_003596308.1	IS30 family transposase	91.7	35.5	53.3
MGA_1476	LOCUS_14310	sequence067:7614..7886(-)	partial			WP_188891678.1	amidohydrolase family protein	100.0	22.4	84.4
MGA_1508	LOCUS_14600	sequence071:1..891(+)	partial			WP_003548719.1	ABC transporter substrate-binding protein/permease	100.0	60.3	93.6
MGA_1509	LOCUS_14610	sequence071:884..1030(+)	frameshift		997	WP_011254050.1	amino acid ABC transporter ATP-binding protein	79.2	15.5	92.1
MGA_1510	LOCUS_14620	sequence071:982..1563(+)	frameshift		997	WP_011254050.1	amino acid ABC transporter ATP-binding protein	97.4	76.7	89.9
MGA_1527	LOCUS_14770	sequence072:6003..>7410(-)	partial			WP_004082256.1	replicative DNA helicase	67.5	68.7	27.0
MGA_1528	LOCUS_14780	sequence073:509..1051(+)	frameshift		507,943	WP_011254625.1	YdcF family protein	81.7	40.1	76.2
MGA_1529	LOCUS_14790	sequence073:949..1254(+)	frameshift		943	WP_011254625.1	YdcF family protein	100.0	27.5	82.2
MGA_1536	LOCUS_14860	sequence074:513..1301(+)	frameshift,internal_stop_codon	1300..1302(+)	489,1359	WP_011254066.1	SLAP domain-containing protein	99.6	60.4	51.6
MGA_1544	LOCUS_14930	sequence075:1..186(+)	partial			WP_003549835.1	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	65.6	27.0	90.0
MGA_1552	LOCUS_15010	sequence075:5660..6169(-)	internal_stop_codon	6209..6211(-)		WP_003642100.1	DUF554 domain-containing protein	97.6	72.9	54.5
MGA_1553	LOCUS_15020	sequence075:6351..>7294(-)	partial			WP_003549814.1	LCP family protein	93.0	68.6	86.6
MGA_1563	LOCUS_15110	sequence077:1..1379(+)	partial			WP_005794862.1	fructose-1,6-bisphosphatase	98.0	67.8	66.0
MGA_1569	LOCUS_15170	sequence078:1064..1288(+)	partial			WP_003550047.1	LPXTG cell wall anchor domain-containing protein	94.6	5.8	54.3
MGA_1570	LOCUS_15180	sequence078:1263..2321(+)	partial			WP_003550047.1	LPXTG cell wall anchor domain-containing protein	78.1	22.9	28.8
MGA_1575	LOCUS_15230	sequence079:1..973(+)	partial			WP_003549080.1	DNA repair protein RadA	100.0	70.5	94.1
MGA_1582	LOCUS_15300	sequence079:6361..6780(+)	partial			WP_003549088.1	hypothetical protein	80.6	56.9	72.2
MGA_1583	LOCUS_15310	sequence080:585..1625(-)	frameshift		1741	WP_003549893.1	IS110 family transposase	99.7	84.6	50.4
MGA_1590	LOCUS_15380	sequence080:5796..6338(-)	internal_stop_codon	6411..6413(-)		WP_010989346.1	alpha/beta hydrolase	91.7	45.8	27.6
MGA_1606	LOCUS_15500	sequence083:5853..>6474(-)	partial			WP_003548513.1	MDR family MFS transporter	99.5	42.3	81.0
MGA_1631	LOCUS_15720	sequence088:112..990(-)	partial			WP_044005378.1	MFS transporter	95.2	66.8	52.2
MGA_1632	LOCUS_15730	sequence088:966..1250(-)	partial			WP_044005378.1	MFS transporter	90.4	21.0	69.4
MGA_1634	LOCUS_15750	sequence088:2592..3053(+)	frameshift		3041,3111	WP_003547496.1	ABC transporter ATP-binding protein	77.1	22.4	57.6
MGA_1635	LOCUS_15760	sequence088:3098..3298(+)	frameshift		3041,3111	WP_003547992.1	ABC transporter ATP-binding protein	90.9	12.7	55.2
MGA_1643	LOCUS_15830	sequence090:1..1915(+)	partial			WP_012775498.1	ATP-binding protein	92.5	52.7	46.2
MGA_1672	LOCUS_16090	sequence094:3430..3696(+)	frameshift		3693	WP_014565762.1	PTS cellobiose transporter subunit IIC	100.0	19.6	100.0
MGA_1673	LOCUS_16100	sequence094:3753..4781(+)	frameshift		3693	WP_014565762.1	PTS cellobiose transporter subunit IIC	100.0	76.0	98.2
MGA_1675	LOCUS_16110	sequence095:110..466(+)	partial			WP_011254459.1	cysteine hydrolase	98.3	63.0	94.0
MGA_1687	LOCUS_16210	sequence098:192..827(-)	partial			WP_011254604.1	RNA-guided endonuclease TnpB family protein	98.6	67.3	43.8
MGA_1688	LOCUS_16220	sequence098:824..1420(-)	partial			WP_011254604.1	RNA-guided endonuclease TnpB family protein	36.9	24.6	46.6
MGA_1692	LOCUS_16260	sequence098:3850..4017(+)	frameshift		3975	WP_003547773.1	MupG family TIM beta-alpha barrel fold protein	100.0	15.2	78.2
MGA_1693	LOCUS_16270	sequence098:4176..4706(+)	frameshift		3975	WP_003547773.1	MupG family TIM beta-alpha barrel fold protein	85.8	43.0	76.3
MGA_1697	LOCUS_16300	sequence099:1947..2708(+)	internal_stop_codon	2706..2708(+)		WP_013582790.1	MFS transporter	98.4	66.7	36.6
MGA_1701	LOCUS_16340	sequence100:1535..2716(-)	partial			WP_014565478.1	SLAP domain-containing protein	54.5	55.7	31.1
MGA_1704	LOCUS_16370	sequence100:4309..4800(-)	partial			WP_003547400.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	99.4	43.5	86.4
MGA_1709	LOCUS_16420	sequence102:3..479(+)	partial			WP_011674652.1	phage portal protein	81.0	27.2	28.5
MGA_1716	LOCUS_16490	sequence102:3910..4332(+)	partial			WP_002403769.1	HK97 gp10 family phage protein	70.0	71.3	40.2
MGA_1725	LOCUS_16540	sequence104:1352..1711(-)	partial			WP_003549759.1	LPXTG cell wall anchor domain-containing protein	89.1	24.2	56.6
MGA_1733	LOCUS_16620	sequence106:173..781(-)	frameshift		783	WP_003548513.1	MDR family MFS transporter	99.5	41.4	80.6
MGA_1734	LOCUS_16630	sequence106:733..1566(-)	frameshift		783	WP_003548513.1	MDR family MFS transporter	92.8	53.0	86.8
MGA_1738	LOCUS_16660	sequence107:191..463(-)	partial			WP_011254622.1	DUF4097 family beta strand repeat-containing protein	96.7	40.5	80.5
MGA_1740	LOCUS_16680	sequence107:593..1705(-)	frameshift		1763	WP_011254623.1	ABC transporter ATP-binding protein	98.9	70.4	89.6
MGA_1741	LOCUS_16690	sequence107:1743..2042(-)	frameshift		1763	WP_011254623.1	ABC transporter ATP-binding protein	93.9	17.9	89.2
MGA_1743	LOCUS_16710	sequence107:3183..3356(+)	internal_stop_codon	3354..3356(+)		WP_015613436.1	CHAP domain-containing protein	100.0	34.7	83.1
MGA_1744	LOCUS_16720	sequence107:3360..3689(+)	internal_stop_codon	3354..3356(+)		WP_015613436.1	CHAP domain-containing protein	100.0	64.1	93.6
MGA_1750	LOCUS_16770	sequence108:3869..4342(+)	partial			WP_004255224.1	biotin transporter BioY	80.9	67.2	52.8
MGA_1781	LOCUS_17000	sequence113:1029..1160(+)	partial			WP_003548184.1	glycoside hydrolase family 2 TIM barrel-domain containing protein	100.0	6.8	95.3
MGA_1797	LOCUS_17110	sequence117:938..2098(-)	partial			WP_000091276.1	oligosaccharide flippase family protein	80.3	66.3	28.2
MGA_1815	LOCUS_17230	sequence122:1545..2225(+)	partial			WP_003548412.1	SLAP domain-containing protein	98.2	32.1	26.2
MGA_1819	LOCUS_17260	sequence123:172..1002(-)	partial			WP_011476596.1	ABC transporter ATP-binding protein	71.4	69.1	37.3
MGA_1822	LOCUS_17280	sequence124:310..1686(+)	internal_stop_codon	1684..1686(+)		WP_011254450.1	oligopeptide ABC transporter substrate-binding protein	99.8	78.7	86.0
MGA_1823	LOCUS_17290	sequence124:1735..2055(+)	internal_stop_codon	1684..1686(+)		WP_011254450.1	oligopeptide ABC transporter substrate-binding protein	100.0	18.2	90.6
MGA_1830	LOCUS_17340	sequence126:2..529(+)	partial			WP_011021910.1	ABC transporter permease	98.3	52.1	68.6
MGA_1834	LOCUS_17380	sequence127:1..2023(+)	partial			WP_012099504.1	TaqI-like C-terminal specificity domain-containing protein	56.6	65.7	25.1
MGA_1836	LOCUS_17400	sequence128:1..1393(+)	partial			WP_003547843.1	M13 family metallopeptidase	100.0	71.6	88.3
MGA_1846	LOCUS_17480	sequence131:1..501(+)	partial			WP_011109529.1	BspA family leucine-rich repeat surface protein	90.4	16.5	42.8
MGA_1847	LOCUS_17490	sequence131:576..2099(+)	partial			WP_011109529.1	BspA family leucine-rich repeat surface protein	80.5	38.5	44.1
MGA_1866	LOCUS_17630	sequence135:254..919(-)	frameshift		1011	WP_003643070.1	FAD-dependent oxidoreductase	91.4	26.5	53.2
MGA_1867	LOCUS_17640	sequence135:949..2001(-)	frameshift		1011	WP_003643070.1	FAD-dependent oxidoreductase	94.3	43.4	52.9
MGA_1870	LOCUS_17660	sequence136:158..310(+)	partial			WP_003706303.1	teichoic acid D-Ala incorporation-associated protein DltX	70.0	71.4	68.6
MGA_1881	LOCUS_17740	sequence139:621..1403(-)	partial			WP_010989349.1	N-acetylmuramoyl-L-alanine amidase	70.8	74.0	32.6
MGA_1896	LOCUS_17870	sequence142:2323..>2839(-)	frameshift		2403,2189	WP_011107343.1	nucleotide sugar dehydrogenase	85.4	33.3	82.9
MGA_1897	LOCUS_17880	sequence143:176..1375(-)	partial			WP_010876478.1	transglutaminase family protein	24.3	38.2	32.4
MGA_1901	LOCUS_17910	sequence144:133..1287(+)	internal_stop_codon	82..84(+),1285..1287(+)		WP_011254026.1	IS1182 family transposase	99.7	66.7	81.2
MGA_1902	LOCUS_17920	sequence144:1280..1747(-)	partial			WP_009890955.1	LysR family transcriptional regulator	86.5	43.3	34.3
MGA_1903	LOCUS_17930	sequence144:1796..2296(+)	partial			WP_003703249.1	type I 3-dehydroquinate dehydratase	97.6	64.3	50.0
MGA_1920	LOCUS_18010	sequence149:828..2120(+)	partial			WP_011948680.1	WG repeat-containing protein	29.5	15.4	27.9
MGA_1941	LOCUS_18140	sequence156:93..314(+)	partial			WP_003547019.1	DUF441 domain-containing protein	97.3	47.0	91.5
MGA_1944	LOCUS_18170	sequence156:1367..>2356(-)	partial			WP_003547024.1	ABC transporter ATP-binding protein	100.0	58.1	79.6
MGA_1945	LOCUS_18180	sequence157:1..919(+)	partial			WP_000090364.1	elongation factor G	98.0	43.4	70.7
MGA_1947	LOCUS_18200	sequence158:1..744(+)	partial			WP_191216118.1	2-oxoacid:acceptor oxidoreductase subunit alpha	99.6	65.4	56.9
MGA_1953	LOCUS_18250	sequence160:1..915(+)	partial			WP_010921814.1	IS66-like element short variant transposase	99.3	66.7	36.5
MGA_1975	LOCUS_18370	sequence167:271..465(+)	frameshift		459	WP_010921814.1	IS66-like element short variant transposase	82.8	12.2	52.7
MGA_1976	LOCUS_18380	sequence167:543..1040(+)	frameshift		954,459	WP_068990772.1	IS66-like element short variant transposase	81.8	30.0	62.2
MGA_1978	LOCUS_18400	sequence167:1247..1597(+)	partial			WP_010921814.1	IS66-like element short variant transposase	100.0	26.0	63.2
MGA_1982	LOCUS_18430	sequence168:1091..1840(-)	frameshift		1832,1775	WP_001130244.1	FtsK/SpoIIIE domain-containing protein	82.3	45.4	28.7
MGA_1985	LOCUS_18450	sequence169:1190..1657(-)	partial			WP_008768973.1	CRISPR-associated endoribonuclease Cas6	99.4	70.4	51.0
MGA_1989	LOCUS_18480	sequence170:1501..>2097(-)	partial			WP_000186339.1	Rep protein	36.9	27.3	37.3
MGA_1991	LOCUS_18490	sequence171:986..1666(+)	partial			WP_003700005.1	ribonuclease J	35.4	14.2	63.8
MGA_1995	LOCUS_18520	sequence173:1..1584(+)	partial			WP_011476043.1	HsdR family type I site-specific deoxyribonuclease	98.3	52.2	43.3
MGA_2013	LOCUS_18640	sequence180:622..930(-)	internal_stop_codon	970..972(-)		WP_011254386.1	SH3-like domain-containing protein	61.8	12.4	53.8