{
    "type": "genome",
    "identifier": "GCA_004552795.1",
    "organism": "Clostridiales bacterium",
    "title": "Clostridiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004552795.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183814",
        "wgs_master": "SFNK00000000.1",
        "refseq_category": "na",
        "taxid": "1898207",
        "species_taxid": "1898207",
        "organism_name": "Clostridiales bacterium",
        "infraspecific_name": "",
        "isolate": "W2P45.006",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455279v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/552/795/GCA_004552795.1_ASM455279v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridiales bacterium"
        ],
        "sample_taxid": [
            "1898207"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.499 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1762539",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "215991",
        "N50 (bp)": "46932",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.9",
        "Number of CDSs": "1652",
        "Average Protein Length": "308.8",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_004556755.1",
                "gtdb_species": "s__F23-B02 sp004556755",
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                "matched_fragments": 478,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004558025.1",
                "gtdb_species": "s__F23-B02 sp004558025",
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                "matched_fragments": 208,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900760205.1",
                "gtdb_species": "s__F23-B02 sp900760205",
                "ani": 79.6665,
                "matched_fragments": 162,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000431075.1",
                "gtdb_species": "s__F23-B02 sp000431075",
                "ani": 79.4248,
                "matched_fragments": 216,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_016292445.1",
                "gtdb_species": "s__F23-B02 sp016292445",
                "ani": 79.0941,
                "matched_fragments": 174,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001916715.1",
                "gtdb_species": "s__F23-B02 sp001916715",
                "ani": 79.0471,
                "matched_fragments": 195,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900556535.1",
                "gtdb_species": "s__F23-B02 sp900556535",
                "ani": 78.8723,
                "matched_fragments": 157,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002472405.1",
                "gtdb_species": "s__F23-B02 sp002472405",
                "ani": 78.813,
                "matched_fragments": 202,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900772725.1",
                "gtdb_species": "s__F23-B02 sp900772725",
                "ani": 78.7742,
                "matched_fragments": 144,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004553495.1",
                "gtdb_species": "s__F23-B02 sp004553495",
                "ani": 78.7112,
                "matched_fragments": 166,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003533405.1",
                "gtdb_species": "s__F23-B02 sp003533405",
                "ani": 78.6676,
                "matched_fragments": 214,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900545805.1",
                "gtdb_species": "s__F23-B02 sp900545805",
                "ani": 78.6309,
                "matched_fragments": 172,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__F23-B02",
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                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018711755.1",
                "gtdb_species": "s__Limivicinus faecipullorum",
                "ani": 77.3769,
                "matched_fragments": 66,
                "total_fragments": 538,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_900551995.1",
                "gtdb_species": "s__CAG-83 sp900551995",
                "ani": 76.1527,
                "matched_fragments": 55,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
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                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.351,
        "doubling_h": 0.36,
        "growth_tmp": 38.862,
        "optimum_tmp": 40.922,
        "optimum_ph": 6.957,
        "genome_size": 3719026.467,
        "gc_content": 40.959,
        "coding_genes": 3326.141,
        "rRNA16S_genes": 7.062,
        "tRNA_genes": 67.767,
        "gram_stain": 0.857,
        "sporulation": 0.615,
        "motility": 0.653,
        "range_salinity": 0.19,
        "facultative_respiration": 0.009,
        "anaerobic_respiration": 0.968,
        "aerobic_respiration": 0.021,
        "mesophilic_range_tmp": 0.809,
        "thermophilic_range_tmp": 0.154,
        "psychrophilic_range_tmp": 0.036,
        "bacillus_cell_shape": 0.897,
        "coccus_cell_shape": 0.08,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.01,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__F23-B02",
        "s__F23-B02 sp004556755"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__F23-B02",
        "s__F23-B02 sp004556755",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "F23-B02",
        "F23-B02",
        "sp004556755"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}