{
    "type": "genome",
    "identifier": "GCA_004554015.1",
    "organism": "Clostridiales bacterium",
    "title": "Clostridiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004554015.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183822",
        "wgs_master": "SFOM00000000.1",
        "refseq_category": "na",
        "taxid": "1898207",
        "species_taxid": "1898207",
        "organism_name": "Clostridiales bacterium",
        "infraspecific_name": "",
        "isolate": "W3P20.023",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455401v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/015/GCA_004554015.1_ASM455401v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridiales bacterium"
        ],
        "sample_taxid": [
            "1898207"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.437 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.98,
        "contamination": 9.26,
        "strain_heterogeneity": 25.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1569787",
        "Number of Sequences": "146",
        "Longest Sequences (bp)": "54269",
        "N50 (bp)": "15266",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.7",
        "Number of CDSs": "1427",
        "Average Protein Length": "301.1",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6491,
                "matched_fragments": 132,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vescimonas fastidiosa",
                "strain": "strain=MM35",
                "accession": "GCA_018326305.1",
                "taxid": 2714353,
                "species_taxid": 2714353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.115,
                "matched_fragments": 116,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillibacter ruminantium",
                "strain": "strain=GH1",
                "accession": "GCA_000307265.1",
                "taxid": 1263547,
                "species_taxid": 1263547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9278,
                "matched_fragments": 77,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9058,
                "matched_fragments": 117,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=JCM 32125",
                "accession": "GCA_010508875.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.7158,
                "matched_fragments": 85,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7127,
                "matched_fragments": 114,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavonifractor plautii",
                "strain": "strain=ATCC 29863",
                "accession": "GCA_000239295.1",
                "taxid": 292800,
                "species_taxid": 292800,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.6665,
                "matched_fragments": 81,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium phoceensis",
                "strain": "strain=GD3",
                "accession": "GCA_001244495.1",
                "taxid": 1650661,
                "species_taxid": 1650661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6355,
                "matched_fragments": 79,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoflavonifractor gallinarum",
                "strain": "strain=DSM 107456",
                "accession": "GCA_014982855.1",
                "taxid": 2779352,
                "species_taxid": 2779352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4739,
                "matched_fragments": 84,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillibacter faecalis",
                "strain": "strain=MM59",
                "accession": "GCA_018408705.1",
                "taxid": 2714358,
                "species_taxid": 2714358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4048,
                "matched_fragments": 76,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacillus massiliensis",
                "strain": "strain=type strain: Marseille-P3216",
                "accession": "GCA_900155735.1",
                "taxid": 1871029,
                "species_taxid": 1871029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5535,
                "matched_fragments": 51,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2963,
                "matched_fragments": 58,
                "total_fragments": 443,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 93.98,
            "contamination": 9.26,
            "strain_heterogeneity": 25.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018918025.1",
                "gtdb_species": "s__ER4 sp900317525",
                "ani": 97.7284,
                "matched_fragments": 410,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 22,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002437735.1",
                "gtdb_species": "s__ER4 sp002437735",
                "ani": 94.8939,
                "matched_fragments": 324,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900552375.1",
                "gtdb_species": "s__ER4 sp900552375",
                "ani": 88.331,
                "matched_fragments": 341,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002405995.1",
                "gtdb_species": "s__ER4 sp002405995",
                "ani": 82.2517,
                "matched_fragments": 270,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550165.1",
                "gtdb_species": "s__ER4 sp900550165",
                "ani": 82.1913,
                "matched_fragments": 258,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.53",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900546295.1",
                "gtdb_species": "s__ER4 sp900546295",
                "ani": 82.0406,
                "matched_fragments": 269,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900763705.1",
                "gtdb_species": "s__ER4 sp900763705",
                "ani": 81.7841,
                "matched_fragments": 239,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552015.1",
                "gtdb_species": "s__ER4 sp900552015",
                "ani": 81.7034,
                "matched_fragments": 275,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900768135.1",
                "gtdb_species": "s__ER4 sp900768135",
                "ani": 81.6877,
                "matched_fragments": 257,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900556145.1",
                "gtdb_species": "s__ER4 sp900556145",
                "ani": 81.6744,
                "matched_fragments": 190,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015068465.1",
                "gtdb_species": "s__ER4 sp015068465",
                "ani": 80.4742,
                "matched_fragments": 225,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016295615.1",
                "gtdb_species": "s__ER4 sp016295615",
                "ani": 80.45,
                "matched_fragments": 194,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__ER4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900552475.1",
                "gtdb_species": "s__CAG-83 sp900552475",
                "ani": 79.3997,
                "matched_fragments": 175,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_000432375.1",
                "gtdb_species": "s__CAG-103 sp000432375",
                "ani": 78.4939,
                "matched_fragments": 110,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_900543625.1",
                "gtdb_species": "s__CAG-103 sp900543625",
                "ani": 78.4026,
                "matched_fragments": 110,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "95.23",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_018265835.1",
                "gtdb_species": "s__CAG-103 sp018265835",
                "ani": 77.7053,
                "matched_fragments": 83,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004556965.1",
                "gtdb_species": "s__CAG-103 sp004556965",
                "ani": 77.5773,
                "matched_fragments": 99,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902760845.1",
                "gtdb_species": "s__CAG-103 sp902760845",
                "ani": 77.3539,
                "matched_fragments": 90,
                "total_fragments": 443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.351,
        "doubling_h": 0.36,
        "growth_tmp": 38.862,
        "optimum_tmp": 40.922,
        "optimum_ph": 6.957,
        "genome_size": 3719026.467,
        "gc_content": 40.959,
        "coding_genes": 3326.141,
        "rRNA16S_genes": 7.062,
        "tRNA_genes": 67.767,
        "gram_stain": 0.857,
        "sporulation": 0.615,
        "motility": 0.653,
        "range_salinity": 0.19,
        "facultative_respiration": 0.009,
        "anaerobic_respiration": 0.968,
        "aerobic_respiration": 0.021,
        "mesophilic_range_tmp": 0.809,
        "thermophilic_range_tmp": 0.154,
        "psychrophilic_range_tmp": 0.036,
        "bacillus_cell_shape": 0.897,
        "coccus_cell_shape": 0.08,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.01,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Hominicoprocola",
        "s__Hominicoprocola sp900317525"
    ],
    "_genome_taxon": [
        "Clostridiales",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Hominicoprocola",
        "s__Hominicoprocola sp900317525",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "Hominicoprocola",
        "Hominicoprocola",
        "sp900317525"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}