{ "type": "genome", "identifier": "GCA_004554255.1", "organism": "Bacteroidales bacterium", "title": "Bacteroidales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Alberta", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004554255.1", "bioproject": "PRJNA494875", "biosample": "SAMN10183694", "wgs_master": "SFNC00000000.1", "refseq_category": "na", "taxid": "2030927", "species_taxid": "2030927", "organism_name": "Bacteroidales bacterium", "infraspecific_name": "", "isolate": "W2P39.026", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/01", "asm_name": "ASM455425v1", "submitter": "University of Alberta", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/255/GCA_004554255.1_ASM455425v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-01", "dateModified": "2019-04-01", "datePublished": "2019-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidales bacterium" ], "sample_taxid": [ "2030927" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Edmonton" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.27, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2131512", "Number of Sequences": "194", "Longest Sequences (bp)": "61765", "N50 (bp)": "16617", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.7", "Number of CDSs": "1642", "Average Protein Length": "362.0", "Coding Ratio (%)": "83.7", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Duncaniella muris", "strain": "strain=DSM 103720", "accession": "GCA_003024805.1", "taxid": 2094150, "species_taxid": 2094150, "relation_to_type": "type", "validated": true, "ani": 77.6426, "matched_fragments": 58, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 2.27, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004554255.1", "gtdb_species": "s__CAG-873 sp004554255", "ani": 100.0, "matched_fragments": 597, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_004557825.1", "gtdb_species": "s__UBA7173 sp004557825", "ani": 84.115, "matched_fragments": 94, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004552485.1", "gtdb_species": "s__CAG-873 sp004552485", "ani": 79.4201, "matched_fragments": 218, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004102785.1", "gtdb_species": "s__UBA7173 sp002491305", "ani": 78.2693, "matched_fragments": 73, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_004553485.1", "gtdb_species": "s__CAG-873 sp004553485", "ani": 77.8252, "matched_fragments": 134, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910589485.1", "gtdb_species": "s__Duncaniella sp910589485", "ani": 77.5271, "matched_fragments": 63, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900762315.1", "gtdb_species": "s__Duncaniella sp900762315", "ani": 77.4868, "matched_fragments": 57, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910575615.1", "gtdb_species": "s__UBA7173 sp001689685", "ani": 77.3138, "matched_fragments": 83, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_900548975.1", "gtdb_species": "s__CAG-873 sp900548975", "ani": 77.1646, "matched_fragments": 88, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900540625.1", "gtdb_species": "s__CAG-873 sp900540625", "ani": 77.1274, "matched_fragments": 75, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910577315.1", "gtdb_species": "s__CAG-873 sp910577315", "ani": 77.0918, "matched_fragments": 92, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014801655.1", "gtdb_species": "s__Paramuribaculum sp014801655", "ani": 77.0257, "matched_fragments": 57, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.73", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_910578035.1", "gtdb_species": "s__CAG-873 sp910578035", "ani": 76.9797, "matched_fragments": 61, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002493945.1", "gtdb_species": "s__CAG-873 sp002493945", "ani": 76.9377, "matched_fragments": 82, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_009775125.1", "gtdb_species": "s__CAG-873 sp001689665", "ani": 76.7756, "matched_fragments": 74, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910586455.1", "gtdb_species": "s__CAG-873 sp910586455", "ani": 76.771, "matched_fragments": 77, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001689495.1", "gtdb_species": "s__Duncaniella sp001689495", "ani": 76.7329, "matched_fragments": 78, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910579105.1", "gtdb_species": "s__UBA7173 sp910579105", "ani": 76.6846, "matched_fragments": 52, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587075.1", "gtdb_species": "s__UBA7173 sp910587075", "ani": 76.6642, "matched_fragments": 68, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900759865.1", "gtdb_species": "s__UBA3263 sp900759865", "ani": 76.623, "matched_fragments": 55, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA3263", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002490635.1", "gtdb_species": "s__CAG-873 sp002490635", "ani": 76.4155, "matched_fragments": 60, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 13, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.217, "cell_length": 0.157, "doubling_h": 0.206, "growth_tmp": 36.585, "optimum_tmp": 36.041, "optimum_ph": 7.086, "genome_size": 3658719.825, "gc_content": 44.947, "coding_genes": 3043.648, "rRNA16S_genes": 4.032, "tRNA_genes": 57.661, "gram_stain": 0.014, "sporulation": 0.0, "motility": 0.04, "range_salinity": 0.0, "facultative_respiration": 0.006, "anaerobic_respiration": 0.958, "aerobic_respiration": 0.034, "mesophilic_range_tmp": 0.985, "thermophilic_range_tmp": 0.014, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.024, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.024, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__CAG-873", "s__CAG-873 sp004554255" ], "_genome_taxon": [ "Bacteroidales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__CAG-873", "s__CAG-873 sp004554255", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Muribaculaceae", "CAG-873", "CAG-873", "sp004554255" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }