{
    "type": "genome",
    "identifier": "GCA_004554325.1",
    "organism": "Phascolarctobacterium sp.",
    "title": "Phascolarctobacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004554325.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183570",
        "wgs_master": "SFMV00000000.1",
        "refseq_category": "na",
        "taxid": "2049039",
        "species_taxid": "2049039",
        "organism_name": "Phascolarctobacterium sp.",
        "infraspecific_name": "",
        "isolate": "W2P33.032",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455432v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/325/GCA_004554325.1_ASM455432v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phascolarctobacterium sp."
        ],
        "sample_taxid": [
            "2049039"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.383 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 43.75,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1335061",
        "Number of Sequences": "254",
        "Longest Sequences (bp)": "42084",
        "N50 (bp)": "6254",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.8",
        "Number of CDSs": "1085",
        "Average Protein Length": "306.1",
        "Coding Ratio (%)": "74.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phascolarctobacterium succinatutens",
                "strain": "strain=YIT 12067",
                "accession": "GCA_000188175.1",
                "taxid": 626940,
                "species_taxid": 626940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2196,
                "matched_fragments": 151,
                "total_fragments": 312,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 43.75,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900553055.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp900553055",
                "ani": 96.6504,
                "matched_fragments": 212,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004562175.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp004562175",
                "ani": 84.6262,
                "matched_fragments": 164,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004558595.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp004558595",
                "ani": 84.5879,
                "matched_fragments": 259,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905212365.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp905212365",
                "ani": 79.3632,
                "matched_fragments": 175,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000188175.1",
                "gtdb_species": "s__Phascolarctobacterium_A succinatutens",
                "ani": 79.2492,
                "matched_fragments": 150,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "95.06",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_000434895.1",
                "gtdb_species": "s__Phascolarctobacterium_A succinatutens_A",
                "ani": 79.2388,
                "matched_fragments": 152,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.38",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900770955.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp900770955",
                "ani": 79.216,
                "matched_fragments": 144,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552855.1",
                "gtdb_species": "s__Phascolarctobacterium_A sp900552855",
                "ani": 78.4704,
                "matched_fragments": 82,
                "total_fragments": 312,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2317131.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Phascolarctobacterium_A",
        "s__Phascolarctobacterium_A sp900553055"
    ],
    "_genome_taxon": [
        "Phascolarctobacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Phascolarctobacterium_A",
        "s__Phascolarctobacterium_A sp900553055",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Acidaminococcales",
        "Acidaminococcaceae",
        "Phascolarctobacterium",
        "A",
        "Phascolarctobacterium",
        "A",
        "sp900553055"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}