{
    "type": "genome",
    "identifier": "GCA_004554435.1",
    "organism": "Bacteroidales bacterium",
    "title": "Bacteroidales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004554435.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183690",
        "wgs_master": "SFMN00000000.1",
        "refseq_category": "na",
        "taxid": "2030927",
        "species_taxid": "2030927",
        "organism_name": "Bacteroidales bacterium",
        "infraspecific_name": "",
        "isolate": "W2P31.025",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455443v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/435/GCA_004554435.1_ASM455443v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidales bacterium"
        ],
        "sample_taxid": [
            "2030927"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.528 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 65.15,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1854803",
        "Number of Sequences": "146",
        "Longest Sequences (bp)": "81303",
        "N50 (bp)": "17914",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.5",
        "Number of CDSs": "1386",
        "Average Protein Length": "370.6",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 65.15,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_004552965.1",
                "gtdb_species": "s__Cryptobacteroides sp004552965",
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                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018066065.1",
                "gtdb_species": "s__Cryptobacteroides sp018066065",
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                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000431015.1",
                "gtdb_species": "s__Cryptobacteroides sp000431015",
                "ani": 78.1865,
                "matched_fragments": 144,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_000433355.1",
                "gtdb_species": "s__Cryptobacteroides sp000433355",
                "ani": 78.0775,
                "matched_fragments": 139,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.66",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900544195.1",
                "gtdb_species": "s__Cryptobacteroides sp900544195",
                "ani": 77.9796,
                "matched_fragments": 143,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002321335.1",
                "gtdb_species": "s__Cryptobacteroides sp002321335",
                "ani": 77.9325,
                "matched_fragments": 109,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902801885.1",
                "gtdb_species": "s__Cryptobacteroides sp902801885",
                "ani": 77.8801,
                "matched_fragments": 116,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017469745.1",
                "gtdb_species": "s__Cryptobacteroides sp017469745",
                "ani": 77.7615,
                "matched_fragments": 146,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900319685.1",
                "gtdb_species": "s__Cryptobacteroides sp900319685",
                "ani": 77.3575,
                "matched_fragments": 118,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_902779765.1",
                "gtdb_species": "s__Cryptobacteroides sp902779765",
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                "matched_fragments": 125,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902785825.1",
                "gtdb_species": "s__Cryptobacteroides sp902785825",
                "ani": 77.2575,
                "matched_fragments": 111,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902780935.1",
                "gtdb_species": "s__Cryptobacteroides sp902780935",
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                "matched_fragments": 112,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
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                "mean_intra_species_ani": "97.52",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017958985.1",
                "gtdb_species": "s__Cryptobacteroides sp017958985",
                "ani": 77.1409,
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                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017478125.1",
                "gtdb_species": "s__Cryptobacteroides sp017478125",
                "ani": 76.5901,
                "matched_fragments": 75,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.217,
        "cell_length": 0.157,
        "doubling_h": 0.206,
        "growth_tmp": 36.585,
        "optimum_tmp": 36.041,
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        "genome_size": 3658719.825,
        "gc_content": 44.947,
        "coding_genes": 3043.648,
        "rRNA16S_genes": 4.032,
        "tRNA_genes": 57.661,
        "gram_stain": 0.014,
        "sporulation": 0.0,
        "motility": 0.04,
        "range_salinity": 0.0,
        "facultative_respiration": 0.006,
        "anaerobic_respiration": 0.958,
        "aerobic_respiration": 0.034,
        "mesophilic_range_tmp": 0.985,
        "thermophilic_range_tmp": 0.014,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.024,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.024,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp004552965"
    ],
    "_genome_taxon": [
        "Bacteroidales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp004552965",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA932",
        "Cryptobacteroides",
        "Cryptobacteroides",
        "sp004552965"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}