{
    "type": "genome",
    "identifier": "GCA_004554775.1",
    "organism": "Subdoligranulum variabile",
    "title": "Subdoligranulum variabile",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004554775.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183615",
        "wgs_master": "SFKI00000000.1",
        "refseq_category": "na",
        "taxid": "214851",
        "species_taxid": "214851",
        "organism_name": "Subdoligranulum variabile",
        "infraspecific_name": "",
        "isolate": "W1P45.008",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455477v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/775/GCA_004554775.1_ASM455477v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Subdoligranulum variabile"
        ],
        "sample_taxid": [
            "214851"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.827 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2928041",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "295057",
        "N50 (bp)": "161615",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "2766",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Subdoligranulum variabile",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Subdoligranulum variabile",
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                "accession": "GCA_025152575.1",
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                "relation_to_type": "type",
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                "matched_fragments": 430,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
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                "accession": "GCA_010509575.1",
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                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9758,
                "matched_fragments": 230,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
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                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9655,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9027,
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                "total_fragments": 945,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8722,
                "matched_fragments": 248,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium prausnitzii",
                "strain": "strain=ATCC 27768",
                "accession": "GCA_003324185.1",
                "taxid": 853,
                "species_taxid": 853,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7383,
                "matched_fragments": 247,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6784,
                "matched_fragments": 191,
                "total_fragments": 945,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_004554775.1",
                "gtdb_species": "s__Gemmiger variabilis_B",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
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                "num_clustered_genomes": 3,
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            {
                "accession": "GCA_900539695.1",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900167555.1",
                "gtdb_species": "s__Gemmiger formicilis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 43,
                "status": "-"
            },
            {
                "accession": "GCF_018784445.1",
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                "ani": 83.8774,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
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            },
            {
                "accession": "GCA_900540595.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
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            {
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            {
                "accession": "GCA_019115045.1",
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            {
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 3241471.0,
        "gc_content": 57.918,
        "coding_genes": null,
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        "sporulation": 0.0,
        "motility": 0.0,
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        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Ruminococcaceae",
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        "s__Gemmiger variabilis_B"
    ],
    "_genome_taxon": [
        "Subdoligranulum",
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        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
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        "s__Gemmiger variabilis_B",
        "Bacteria",
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        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Gemmiger",
        "Gemmiger",
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    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}