{ "type": "genome", "identifier": "GCA_004554815.1", "organism": "Limosilactobacillus reuteri", "title": "Limosilactobacillus reuteri", "description": "unverified source organism; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Alberta", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004554815.1", "bioproject": "PRJNA494875", "biosample": "SAMN10183309", "wgs_master": "SFKD00000000.1", "refseq_category": "na", "taxid": "1598", "species_taxid": "1598", "organism_name": "Limosilactobacillus reuteri", "infraspecific_name": "", "isolate": "W1P44.042", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/01", "asm_name": "ASM455481v1", "submitter": "University of Alberta", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/554/815/GCA_004554815.1_ASM455481v1", "excluded_from_refseq": "unverified source organism; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-01", "dateModified": "2019-04-01", "datePublished": "2019-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Limosilactobacillus reuteri" ], "sample_taxid": [ "1598" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Edmonton" ], "sample_host_location_id": [], "data_size": "0.540 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1886628", "Number of Sequences": "205", "Longest 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"GCA_005341425.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.429, "matched_fragments": 64, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001027985.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 77.4118, "matched_fragments": 70, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=DSM 20052", "accession": "GCA_013394085.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.3538, "matched_fragments": 65, "total_fragments": 520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus oris", "strain": "strain=DSM 4864", "accession": "GCA_001434465.1", "taxid": 1632, "species_taxid": 1632, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019114515.1", "gtdb_species": "s__Limosilactobacillus merdigallinarum", "ani": 78.6927, "matched_fragments": 54, "total_fragments": 520, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001437055.1", "gtdb_species": "s__Limosilactobacillus secaliphilus", "ani": 78.3483, "matched_fragments": 70, "total_fragments": 520, "gtdb_taxonomy": 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