{
    "type": "genome",
    "identifier": "GCA_004555175.1",
    "organism": "Lentisphaeraceae bacterium",
    "title": "Lentisphaeraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004555175.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183312",
        "wgs_master": "SFJE00000000.1",
        "refseq_category": "na",
        "taxid": "2461380",
        "species_taxid": "2461380",
        "organism_name": "Lentisphaeraceae bacterium",
        "infraspecific_name": "",
        "isolate": "W1P29.020",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455517v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/555/175/GCA_004555175.1_ASM455517v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lentisphaeraceae bacterium"
        ],
        "sample_taxid": [
            "2461380"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.582 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2078870",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "145379",
        "N50 (bp)": "55157",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "1611",
        "Average Protein Length": "379.0",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004555175.1",
                "gtdb_species": "s__Spyradenecus sp004555175",
                "ani": 100.0,
                "matched_fragments": 656,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900771325.1",
                "gtdb_species": "s__Spyradenecus sp900771325",
                "ani": 89.3882,
                "matched_fragments": 519,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018713405.1",
                "gtdb_species": "s__Spyradenecus faecavium",
                "ani": 80.0528,
                "matched_fragments": 224,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017558005.1",
                "gtdb_species": "s__Spyradenecus sp017558005",
                "ani": 77.9909,
                "matched_fragments": 86,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.80",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017548245.1",
                "gtdb_species": "s__Spyradenecus sp017548245",
                "ani": 77.2297,
                "matched_fragments": 75,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA1067;g__Spyradenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902761575.1",
                "gtdb_species": "s__UBA3636 sp902761575",
                "ani": 75.7121,
                "matched_fragments": 52,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__RFP12;f__UBA3636;g__UBA3636",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.69",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 23.0,
        "optimum_tmp": 20.0,
        "optimum_ph": 8.0,
        "genome_size": 6023180.0,
        "gc_content": 41.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
        "o__RFP12",
        "f__UBA1067",
        "g__Spyradenecus",
        "s__Spyradenecus sp004555175"
    ],
    "_genome_taxon": [
        "Lentisphaeraceae",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Kiritimatiellia",
        "o__RFP12",
        "f__UBA1067",
        "g__Spyradenecus",
        "s__Spyradenecus sp004555175",
        "Bacteria",
        "Verrucomicrobiota",
        "Kiritimatiellia",
        "RFP12",
        "UBA1067",
        "Spyradenecus",
        "Spyradenecus",
        "sp004555175"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}