{ "type": "genome", "identifier": "GCA_004556655.1", "organism": "Lachnospiraceae bacterium", "title": "Lachnospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Alberta", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004556655.1", "bioproject": "PRJNA494875", "biosample": "SAMN10183297", "wgs_master": "SFGF00000000.1", "refseq_category": "na", "taxid": "1898203", "species_taxid": "1898203", "organism_name": "Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "W0P45.013", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/01", "asm_name": "ASM455665v1", "submitter": "University of Alberta", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/556/655/GCA_004556655.1_ASM455665v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-01", "dateModified": "2019-04-01", "datePublished": "2019-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Lachnospiraceae bacterium" ], "sample_taxid": [ "1898203" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Edmonton" ], "sample_host_location_id": [], "data_size": "1.127 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3969489", "Number of Sequences": "193", "Longest Sequences (bp)": "150691", "N50 (bp)": "43630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "3765", "Average Protein Length": "308.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Wansuia hejianensis", "strain": "strain=NSJ-29", "accession": "GCA_014337215.1", "taxid": 2763667, "species_taxid": 2763667, "relation_to_type": "type", "validated": true, "ani": 79.9715, "matched_fragments": 70, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 78.2399, "matched_fragments": 118, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 78.0843, "matched_fragments": 123, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 78.0337, "matched_fragments": 84, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes faecalis", "strain": "strain=AGMB03513", "accession": "GCA_018982945.1", "taxid": 2738446, "species_taxid": 2738446, "relation_to_type": "type", "validated": true, "ani": 77.7041, "matched_fragments": 62, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, 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"relation_to_type": "type", "validated": true, "ani": 77.4438, "matched_fragments": 77, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_009831375.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4291, "matched_fragments": 92, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_004295125.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 77.416, "matched_fragments": 59, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", 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95, "status": "below_threshold" }, { "organism_name": "Murimonas intestini", "strain": "strain=DSM 26524", "accession": "GCA_024622195.1", "taxid": 1337051, "species_taxid": 1337051, "relation_to_type": "type", "validated": true, "ani": 77.1116, "matched_fragments": 73, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_000425525.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 77.0776, "matched_fragments": 90, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_025151995.1", "taxid": 438033, "species_taxid": 438033, "relation_to_type": "type", "validated": true, "ani": 76.9861, "matched_fragments": 93, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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