{
    "type": "genome",
    "identifier": "GCA_004556705.1",
    "organism": "Ruminococcus sp.",
    "title": "Ruminococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004556705.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183604",
        "wgs_master": "SFGA00000000.1",
        "refseq_category": "na",
        "taxid": "41978",
        "species_taxid": "41978",
        "organism_name": "Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "W0P45.002",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455670v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/556/705/GCA_004556705.1_ASM455670v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ruminococcus sp."
        ],
        "sample_taxid": [
            "41978"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.633 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2238204",
        "Number of Sequences": "101",
        "Longest Sequences (bp)": "182871",
        "N50 (bp)": "44483",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.5",
        "Number of CDSs": "2178",
        "Average Protein Length": "298.3",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruminococcus bromii",
                "strain": "strain=ATCC 27255",
                "accession": "GCA_002834225.1",
                "taxid": 40518,
                "species_taxid": 40518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3987,
                "matched_fragments": 53,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004556705.1",
                "gtdb_species": "s__Fimenecus sp004556705",
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                "matched_fragments": 691,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900315985.1",
                "gtdb_species": "s__Fimenecus sp900315985",
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                "matched_fragments": 183,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "96.57",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_000432435.1",
                "gtdb_species": "s__Fimenecus sp000432435",
                "ani": 78.3844,
                "matched_fragments": 135,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCA_002490425.1",
                "gtdb_species": "s__Fimenecus sp002490425",
                "ani": 78.2769,
                "matched_fragments": 124,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002361875.1",
                "gtdb_species": "s__Fimenecus sp002361875",
                "ani": 78.0894,
                "matched_fragments": 112,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017438845.1",
                "gtdb_species": "s__Fimenecus sp017438845",
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                "matched_fragments": 183,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016290515.1",
                "gtdb_species": "s__Fimenecus sp016290515",
                "ani": 78.0622,
                "matched_fragments": 118,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015066635.1",
                "gtdb_species": "s__Fimenecus sp015066635",
                "ani": 77.8386,
                "matched_fragments": 162,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002437245.1",
                "gtdb_species": "s__Fimenecus sp002437245",
                "ani": 77.4318,
                "matched_fragments": 116,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Fimenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900539465.1",
                "gtdb_species": "s__CAG-488 sp900539465",
                "ani": 76.9631,
                "matched_fragments": 67,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__CAG-488",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015066105.1",
                "gtdb_species": "s__UBA6857 sp015066105",
                "ani": 76.9105,
                "matched_fragments": 62,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017938985.1",
                "gtdb_species": "s__CAG-177 sp017938985",
                "ani": 76.5416,
                "matched_fragments": 52,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__CAG-177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017502085.1",
                "gtdb_species": "s__CAG-177 sp017502085",
                "ani": 76.3066,
                "matched_fragments": 57,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__CAG-177",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Fimenecus",
        "s__Fimenecus sp004556705"
    ],
    "_genome_taxon": [
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Fimenecus",
        "s__Fimenecus sp004556705",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Fimenecus",
        "Fimenecus",
        "sp004556705"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}