{
    "type": "genome",
    "identifier": "GCA_004557905.1",
    "organism": "Clostridiales bacterium",
    "title": "Clostridiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004557905.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183741",
        "wgs_master": "SFFH00000000.1",
        "refseq_category": "na",
        "taxid": "1898207",
        "species_taxid": "1898207",
        "organism_name": "Clostridiales bacterium",
        "infraspecific_name": "",
        "isolate": "W0P39.006",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM455790v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/557/905/GCA_004557905.1_ASM455790v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridiales bacterium"
        ],
        "sample_taxid": [
            "1898207"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.782 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 96.88,
        "contamination": 6.63,
        "strain_heterogeneity": 16.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2802820",
        "Number of Sequences": "111",
        "Longest Sequences (bp)": "202309",
        "N50 (bp)": "44895",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "2533",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ligaoa zhengdingensis",
                "strain": "strain=NSJ-31",
                "accession": "GCA_014384885.1",
                "taxid": 2763658,
                "species_taxid": 2763658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7043,
                "matched_fragments": 52,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0578,
                "matched_fragments": 72,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mitsuokella multacida",
                "strain": "strain=DSM 20544",
                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0301,
                "matched_fragments": 52,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catenulispora acidiphila",
                "strain": "strain=DSM 44928",
                "accession": "GCA_000024025.1",
                "taxid": 304895,
                "species_taxid": 304895,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0678,
                "matched_fragments": 78,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
                "strain": "strain=ATCC 10745",
                "accession": "GCA_009834665.1",
                "taxid": 1906,
                "species_taxid": 1906,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.0613,
                "matched_fragments": 57,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
                "strain": "strain=ATCC 10745",
                "accession": "GCA_008704425.1",
                "taxid": 1906,
                "species_taxid": 1906,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.0524,
                "matched_fragments": 58,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces bambusae",
                "strain": "strain=T110",
                "accession": "GCA_020532645.1",
                "taxid": 1550616,
                "species_taxid": 1550616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0495,
                "matched_fragments": 59,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium macuxiense",
                "strain": "strain=BR 10303",
                "accession": "GCA_001542415.1",
                "taxid": 1755647,
                "species_taxid": 1755647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.009,
                "matched_fragments": 51,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.005,
                "matched_fragments": 52,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myxococcus stipitatus",
                "strain": "strain=DSM 14675",
                "accession": "GCA_000331735.1",
                "taxid": 83455,
                "species_taxid": 83455,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 74.9055,
                "matched_fragments": 65,
                "total_fragments": 877,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 96.88,
            "contamination": 6.63,
            "strain_heterogeneity": 16.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_004557905.1",
                "gtdb_species": "s__Ventricola sp004557905",
                "ani": 100.0,
                "matched_fragments": 870,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017937505.1",
                "gtdb_species": "s__Ventricola sp017937505",
                "ani": 93.4533,
                "matched_fragments": 683,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056305.1",
                "gtdb_species": "s__Ventricola sp015056305",
                "ani": 83.4847,
                "matched_fragments": 535,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017545905.1",
                "gtdb_species": "s__Ventricola sp017545905",
                "ani": 82.715,
                "matched_fragments": 458,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017412025.1",
                "gtdb_species": "s__Ventricola sp017412025",
                "ani": 82.4309,
                "matched_fragments": 444,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004555535.1",
                "gtdb_species": "s__Ventricola sp004555535",
                "ani": 82.3144,
                "matched_fragments": 503,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017436605.1",
                "gtdb_species": "s__Ventricola sp017436605",
                "ani": 82.2617,
                "matched_fragments": 498,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017397695.1",
                "gtdb_species": "s__Ventricola sp017397695",
                "ani": 82.1255,
                "matched_fragments": 475,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004556985.1",
                "gtdb_species": "s__Ventricola sp004556985",
                "ani": 82.0433,
                "matched_fragments": 436,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017936375.1",
                "gtdb_species": "s__Ventricola sp017936375",
                "ani": 82.0088,
                "matched_fragments": 445,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017521565.1",
                "gtdb_species": "s__Ventricola sp017521565",
                "ani": 81.9292,
                "matched_fragments": 463,
                "total_fragments": 877,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.351,
        "doubling_h": 0.36,
        "growth_tmp": 38.862,
        "optimum_tmp": 40.922,
        "optimum_ph": 6.957,
        "genome_size": 3719026.467,
        "gc_content": 40.959,
        "coding_genes": 3326.141,
        "rRNA16S_genes": 7.062,
        "tRNA_genes": 67.767,
        "gram_stain": 0.857,
        "sporulation": 0.615,
        "motility": 0.653,
        "range_salinity": 0.19,
        "facultative_respiration": 0.009,
        "anaerobic_respiration": 0.968,
        "aerobic_respiration": 0.021,
        "mesophilic_range_tmp": 0.809,
        "thermophilic_range_tmp": 0.154,
        "psychrophilic_range_tmp": 0.036,
        "bacillus_cell_shape": 0.897,
        "coccus_cell_shape": 0.08,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.01,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__Aristaeellaceae",
        "g__Ventricola",
        "s__Ventricola sp004557905"
    ],
    "_genome_taxon": [
        "Clostridiales",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__Aristaeellaceae",
        "g__Ventricola",
        "s__Ventricola sp004557905",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Christensenellales",
        "Aristaeellaceae",
        "Ventricola",
        "Ventricola",
        "sp004557905"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}