{
    "type": "genome",
    "identifier": "GCA_004560465.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004560465.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183447",
        "wgs_master": "SFUS00000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "W2P1.040",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM456046v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/560/465/GCA_004560465.1_ASM456046v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.636 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.72,
        "contamination": 9.53,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2233528",
        "Number of Sequences": "318",
        "Longest Sequences (bp)": "39207",
        "N50 (bp)": "8986",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.2",
        "Number of CDSs": "1775",
        "Average Protein Length": "316.5",
        "Coding Ratio (%)": "75.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruminococcus flavefaciens",
                "strain": "strain=ATCC 19208",
                "accession": "GCA_000518765.1",
                "taxid": 1265,
                "species_taxid": 1265,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.4836,
                "matched_fragments": 404,
                "total_fragments": 590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminococcus bicirculans",
                "strain": "strain=80/3",
                "accession": "GCA_000723465.1",
                "taxid": 1160721,
                "species_taxid": 1160721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3683,
                "matched_fragments": 60,
                "total_fragments": 590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminococcus albus",
                "strain": "strain=DSM 20455",
                "accession": "GCA_000621285.1",
                "taxid": 1264,
                "species_taxid": 1264,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.7112,
                "matched_fragments": 70,
                "total_fragments": 590,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminococcus albus",
                "strain": "strain=7",
                "accession": "GCA_000179635.2",
                "taxid": 1264,
                "species_taxid": 1264,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.7064,
                "matched_fragments": 71,
                "total_fragments": 590,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 9.53,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900119075.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_Q",
                "ani": 98.0098,
                "matched_fragments": 549,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000621845.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_E",
                "ani": 95.323,
                "matched_fragments": 534,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000526795.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_D",
                "ani": 87.4309,
                "matched_fragments": 513,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004554385.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_T",
                "ani": 85.5851,
                "matched_fragments": 479,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017519415.1",
                "gtdb_species": "s__Ruminococcus sp017519415",
                "ani": 82.8507,
                "matched_fragments": 318,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900108555.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_P",
                "ani": 82.5395,
                "matched_fragments": 421,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017519145.1",
                "gtdb_species": "s__Ruminococcus sp017519145",
                "ani": 82.2323,
                "matched_fragments": 404,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902780115.1",
                "gtdb_species": "s__Ruminococcus flavefaciens_Y",
                "ani": 82.0549,
                "matched_fragments": 280,
                "total_fragments": 590,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminococcus",
        "s__Ruminococcus flavefaciens_Q"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminococcus",
        "s__Ruminococcus flavefaciens_Q",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Ruminococcus",
        "Ruminococcus",
        "flavefaciens",
        "Q"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}