{
    "type": "genome",
    "identifier": "GCA_004562455.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004562455.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183344",
        "wgs_master": "SFQT00000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "W0P21.047",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM456245v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/562/455/GCA_004562455.1_ASM456245v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.850 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.98,
        "contamination": 12.5,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2973976",
        "Number of Sequences": "381",
        "Longest Sequences (bp)": "114440",
        "N50 (bp)": "11671",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.7",
        "Number of CDSs": "2780",
        "Average Protein Length": "281.3",
        "Coding Ratio (%)": "78.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruthenibacterium lactatiformans",
                "strain": "strain=585-1",
                "accession": "GCA_000949455.1",
                "taxid": 1550024,
                "species_taxid": 1550024,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.7378,
                "matched_fragments": 213,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.79,
                "matched_fragments": 66,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5207,
                "matched_fragments": 119,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=JCM 31915",
                "accession": "GCA_010509575.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2664,
                "matched_fragments": 55,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1635,
                "matched_fragments": 57,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7355,
                "matched_fragments": 56,
                "total_fragments": 780,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.98,
            "contamination": 12.5,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000949455.1",
                "gtdb_species": "s__Ruthenibacterium lactatiformans",
                "ani": 87.8005,
                "matched_fragments": 212,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 47,
                "status": "-"
            },
            {
                "accession": "GCA_019119935.1",
                "gtdb_species": "s__Ruthenibacterium merdavium",
                "ani": 78.043,
                "matched_fragments": 79,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546885.1",
                "gtdb_species": "s__Ruthenibacterium merdipullorum",
                "ani": 77.9088,
                "matched_fragments": 95,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_905212515.1",
                "gtdb_species": "s__Ruthenibacterium sp905212515",
                "ani": 77.8978,
                "matched_fragments": 99,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002160015.1",
                "gtdb_species": "s__Anaerofilum faecale",
                "ani": 77.8821,
                "matched_fragments": 84,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019113785.1",
                "gtdb_species": "s__Ruthenibacterium merdigallinarum",
                "ani": 77.7172,
                "matched_fragments": 105,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018380115.1",
                "gtdb_species": "s__Ruthenibacterium sp018380115",
                "ani": 77.6635,
                "matched_fragments": 102,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_004345265.1",
                "gtdb_species": "s__Fournierella massiliensis",
                "ani": 77.573,
                "matched_fragments": 117,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002161595.1",
                "gtdb_species": "s__Fournierella sp002161595",
                "ani": 77.5439,
                "matched_fragments": 105,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002160145.1",
                "gtdb_species": "s__Fournierella sp002160145",
                "ani": 77.4002,
                "matched_fragments": 110,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019119025.1",
                "gtdb_species": "s__Fournierella excrementigallinarum",
                "ani": 77.3257,
                "matched_fragments": 83,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002315015.1",
                "gtdb_species": "s__Ruthenibacterium avium",
                "ani": 77.1897,
                "matched_fragments": 83,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014287275.1",
                "gtdb_species": "s__Pygmaiobacter sp014287275",
                "ani": 76.7877,
                "matched_fragments": 69,
                "total_fragments": 780,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Pygmaiobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruthenibacterium",
        "s__Ruthenibacterium sp944388395"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruthenibacterium",
        "s__Ruthenibacterium sp944388395",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Ruthenibacterium",
        "Ruthenibacterium",
        "sp944388395"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}