{
    "type": "genome",
    "identifier": "GCA_004562655.1",
    "organism": "bacterium",
    "title": "bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Alberta",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004562655.1",
        "bioproject": "PRJNA494875",
        "biosample": "SAMN10183389",
        "wgs_master": "SFSM00000000.1",
        "refseq_category": "na",
        "taxid": "1869227",
        "species_taxid": "1869227",
        "organism_name": "bacterium",
        "infraspecific_name": "",
        "isolate": "W0P9.044",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/01",
        "asm_name": "ASM456265v1",
        "submitter": "University of Alberta",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/562/655/GCA_004562655.1_ASM456265v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-01",
    "dateModified": "2019-04-01",
    "datePublished": "2019-04-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "bacterium"
        ],
        "sample_taxid": [
            "1869227"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Edmonton"
        ],
        "sample_host_location_id": [],
        "data_size": "0.472 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.64,
        "contamination": 4.55,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1702241",
        "Number of Sequences": "399",
        "Longest Sequences (bp)": "31173",
        "N50 (bp)": "4591",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.8",
        "Number of CDSs": "1485",
        "Average Protein Length": "260.4",
        "Coding Ratio (%)": "68.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Campylobacter coli",
                "strain": "strain=LMG 9860",
                "accession": "GCA_000254135.2",
                "taxid": 195,
                "species_taxid": 195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5041,
                "matched_fragments": 278,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter coli",
                "strain": "strain=CCUG 11283",
                "accession": "GCA_008802085.1",
                "taxid": 195,
                "species_taxid": 195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2093,
                "matched_fragments": 297,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter coli",
                "strain": "strain=LMG6440",
                "accession": "GCA_003590975.1",
                "taxid": 195,
                "species_taxid": 195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1978,
                "matched_fragments": 301,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter coli",
                "strain": "strain=NCTC11366",
                "accession": "GCA_900446355.1",
                "taxid": 195,
                "species_taxid": 195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.196,
                "matched_fragments": 299,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter jejuni subsp. jejuni",
                "strain": "strain=CCUG 11284",
                "accession": "GCA_008802045.1",
                "taxid": 32022,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6036,
                "matched_fragments": 241,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter hepaticus",
                "strain": "strain=HV10",
                "accession": "GCA_001687475.2",
                "taxid": 1813019,
                "species_taxid": 1813019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3647,
                "matched_fragments": 209,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter taeniopygiae",
                "strain": "strain=MIT10-5678",
                "accession": "GCA_005406225.1",
                "taxid": 2510188,
                "species_taxid": 2510188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1445,
                "matched_fragments": 194,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter aviculae",
                "strain": "strain=MIT17-670",
                "accession": "GCA_005406215.1",
                "taxid": 2510190,
                "species_taxid": 2510190,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1353,
                "matched_fragments": 211,
                "total_fragments": 338,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 71.64,
            "contamination": 4.55,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000254135.1",
                "gtdb_species": "s__Campylobacter_D coli",
                "ani": 98.591,
                "matched_fragments": 277,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 983,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001492295.1",
                "gtdb_species": "s__Campylobacter_D coli_B",
                "ani": 93.5576,
                "matched_fragments": 281,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 59,
                "status": "-"
            },
            {
                "accession": "GCF_000470055.1",
                "gtdb_species": "s__Campylobacter_D coli_A",
                "ani": 91.93,
                "matched_fragments": 256,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 86,
                "status": "-"
            },
            {
                "accession": "GCF_001457695.1",
                "gtdb_species": "s__Campylobacter_D jejuni",
                "ani": 85.7519,
                "matched_fragments": 237,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 1918,
                "status": "-"
            },
            {
                "accession": "GCA_000163995.1",
                "gtdb_species": "s__Campylobacter_D jejuni_A",
                "ani": 84.272,
                "matched_fragments": 232,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002179165.1",
                "gtdb_species": "s__Campylobacter_D jejuni_B",
                "ani": 83.7479,
                "matched_fragments": 226,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004378855.1",
                "gtdb_species": "s__Campylobacter_D sp004378855",
                "ani": 81.3952,
                "matched_fragments": 191,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001687475.2",
                "gtdb_species": "s__Campylobacter_D hepaticus",
                "ani": 81.333,
                "matched_fragments": 210,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 33,
                "status": "-"
            },
            {
                "accession": "GCF_005406215.1",
                "gtdb_species": "s__Campylobacter_D aviculae",
                "ani": 81.1353,
                "matched_fragments": 211,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005406205.1",
                "gtdb_species": "s__Campylobacter_D estrildidarum",
                "ani": 80.8624,
                "matched_fragments": 201,
                "total_fragments": 338,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Campylobacterota",
        "c__Campylobacteria",
        "o__Campylobacterales",
        "f__Campylobacteraceae",
        "g__Campylobacter_D",
        "s__Campylobacter_D coli"
    ],
    "_genome_taxon": [
        "bacterium",
        "d__Bacteria",
        "p__Campylobacterota",
        "c__Campylobacteria",
        "o__Campylobacterales",
        "f__Campylobacteraceae",
        "g__Campylobacter_D",
        "s__Campylobacter_D coli",
        "Bacteria",
        "Campylobacterota",
        "Campylobacteria",
        "Campylobacterales",
        "Campylobacteraceae",
        "Campylobacter",
        "D",
        "Campylobacter",
        "D",
        "coli"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}